bunnech/cellot

Issues

• Training time

  #8 opened a year ago by DanLesman
  3

• Run cAE in an OOD experiment with unseen cell type

  #35 opened a month ago by ArturDev42
  0

• Data link broken

  #36 opened 3 months ago by jannisborn
  2

• No such file or directory：'datasets/scrna-sciplex3/hvg-top1k-train-only.h5ad'

  #9 opened a year ago by ZexiChen502
  3

• How to speed up the training process?

  #33 opened 4 months ago by weizhiting
  2

• Generalization to unseen cell types

  #34 opened 4 months ago by ArturDev42
  2

• 4i dataset

  #21 opened 7 months ago by Ralmohsen
  5

• 4i dataset missing

  #32 opened 5 months ago by TedSIWEILIU
  1

• target key in config, 4i.yaml

  #22 opened 7 months ago by Ralmohsen
  2

• Supervised Training and Test selection

  #31 opened 5 months ago by Xabiermm1
  1

• Are the cells in imputed.h5ad the simulated cells?

  #29 opened 5 months ago by JeanRadig
  8

• Glioblastoma dataset: failing to read the anndata

  #30 opened 5 months ago by JeanRadig
  1

• Crossspecies: unable to reproduce results for CellOT

  #28 opened 6 months ago by Anzoteh96
  4

• Question about the groupby parameter?

  #27 opened 7 months ago by weizhiting
  0

• How to set the parameter target if i want to predict the outcome of multiple drugs?

  #26 opened 7 months ago by weizhiting
  1

• How can we train a model with multiple targets in the ood mode?

  #25 opened 7 months ago by weizhiting
  2

• Request to add commands to run Crossspecies and GBM Dataset

  #20 opened 7 months ago by Anzoteh96
  6

• UMAP not found when plotting

  #24 opened 7 months ago by Anzoteh96
  3

• fail to open the file“hvg-train-only.h5ad”in scrna-crossspecies

  #23 opened 7 months ago by suxiaoman666888
  1

• The R2 metric

  #19 opened 7 months ago by Flroa10086633
  1

• Unable to reproduce the results of Sciplex3

  #17 opened 8 months ago by XiejcSYSU
  2

• Unable to reproduce the results of Sciplex3

  #18 opened 8 months ago by XiejcSYSU
  0

• Error 4i evaluate.py

  #15 opened 8 months ago by Thapeachydude
  7

• Missing plots data in the results folder

  #16 opened 8 months ago by jiyuanj
  1

• Obtain mapping inside training dataset

  #14 opened 9 months ago by riu83
  2

• 2nd Generating prediction after the model is trained.

  #13 opened 9 months ago by uddamvathanak
  6

• GPU acceleration

  #2 opened 9 months ago by yanwu2014
  2

• Generating predictions using CellOT

  #3 opened 9 months ago by yanwu2014
  1

• OOD train test split question

  #12 opened 9 months ago by DanLesman
  1

• Scanpy/anndata error.

  #10 opened 10 months ago by mksingh2104
  2

• AssertionError

  #11 opened 10 months ago by jiyuanj
  1

• Question

  #7 opened a year ago by PaulArthurM
  0

• The architecture of ICNN

  #6 opened a year ago by Tony4709
  2

• Any example for o.o.s?

  #5 opened a year ago by huboqiang
  1

• online methods

  #4 opened a year ago by wconnell
  1

• Typo in setup.py

  #1 opened 2 years ago by merelkuijs
  1