Pinned Repositories
biopaxTutorial
BioPAX Tutorial Material
causalpath_cytoscape_app
docker-jupyter-keras-tensorflow-tools
Dockerized version of Jupyter with installed Keras, TensorFlow, etc
docker-nodejs-http-server
NodeJS with HTTP Server
enhance_nlp_interaction_network_gsoc2020
gsoc_2023_pytorch_pathway_commons
h5adcat
ihop-reach
A web application to access biological data extracted from biomedical literature.
snp_plotter
snp.plotter is an R package that creates publishable-quality plots of p-values using single SNP and/or haplotype data.
cannin's Repositories
cannin/ihop-reach
A web application to access biological data extracted from biomedical literature.
cannin/docker-nodejs-http-server
NodeJS with HTTP Server
cannin/sysbiocancer2019
Tutorials for Pathway Commons (https://pathwaycommons.org) network analysis tools. Prepared for the Computational Systems Biology of Cancer course at Institut Curie
cannin/sbgn2sif
Converting SBGN-encoded pathways to the SIF file format
cannin/factoid_scoring
cannin/MeSHHeading2vec
MeSHHeading2vec: A new method for representing MeSH headings as vectors based on graph embedding algorithm
cannin/shiny_network
Example R Shiny application cytoscape/cyjShiny
cannin/adaptive-count-ception
This the repository for HKUST COMP4901J final project. We add some residual adapters to the coun-ception network so that it can quickly adapt to new domain.
cannin/bioinformatics_usp_workshop
cannin/blog
Personal blog
cannin/captainhook
A generic webhook endpoint that runs scripts based on the URL called
cannin/causalpath
A project for exploring differentially active signaling paths related to proteomics datasets
cannin/cellline_citations
Cell Line Citation Count Pipeline Using Google Scholar
cannin/covid-sicr-test
cannin/covid19-analysis
Analyze Disease Maps and Indra COVID19 Datasets
cannin/custom_regression_loss
cannin/del_tmp
cannin/dell
cannin/docker-pull
cannin/enrichmentMap_jordan2016
cannin/ggcor
Extended tools for correlation analysis and visualization.
cannin/mutationhotspots
Algorithms to detect mutational hotspots
cannin/plms-graph2text
Investigating Pretrained Language Models for Graph-to-Text Generation
cannin/rcausalpath
cannin/rcellminerDemoData
Demo data package compatible with rcellminer
cannin/repo2docker-test
cannin/sbgnviz.js-sample-app
A sample application for SBGNViz
cannin/slingshot
Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
cannin/targetscore
cannin/targetscore_binder