Pinned Repositories
Benchling-API-Client
Python Client for the Benchling API
Benchling2SBOLv
Automatic Plotting of DNA Sequences from Benchling into SBOL Visual
DaniO5P
paper-5utr-design
Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"
Plate-Design
Library to design cell culture experiments in plates with chemical inducers
pyswarm
Particle swarm optimization (PSO) that supports constraints
tbarplot
Tlc5941_library
A library for using the TLC5941 with Atmel microcontrollers.
FlowCal
Python Flow Cytometry Calibration Library
LPA-hardware
CAD files and firmware of the LPA, and imager-based calibration script.
castillohair's Repositories
castillohair/paper-5utr-design
Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"
castillohair/Benchling-API-Client
Python Client for the Benchling API
castillohair/Benchling2SBOLv
Automatic Plotting of DNA Sequences from Benchling into SBOL Visual
castillohair/DaniO5P
castillohair/Tlc5941_library
A library for using the TLC5941 with Atmel microcontrollers.
castillohair/Plate-Design
Library to design cell culture experiments in plates with chemical inducers
castillohair/pyswarm
Particle swarm optimization (PSO) that supports constraints
castillohair/tbarplot
castillohair/corefsp
castillohair/corner.py
Make some beautiful corner plots
castillohair/dnaplotlib
DNA plotting library for Python
castillohair/FlowCal
Python Flow Cytometry Calibration Library
castillohair/genesis
Deep Exploration Networks - Diverse Deep Generative Models for DNA, RNA and Protein Sequences
castillohair/isolearn
Automated loading and processing of genomics data for Deep Learning
castillohair/LPA-Design
castillohair/LPA-Program
Generate programs for a Light Plate Apparatus (LPA).
castillohair/matrix-clustering_stand-alone
This is a stand-alone version of RSAT matrix-clustering. This version is faster and simplified compared to the original RSAT matrix-clustering but the graphical output is still under development.
castillohair/RBS-Calculator-Client
Python Client for the Salis RBS Calculator
castillohair/scrambler
Interpretation by Deep Generative Masking for Biological Sequences
castillohair/shap
A game theoretic approach to explain the output of any machine learning model.
castillohair/tfmodisco-lite
A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.