cbreenmachine

cbreenmachine's Stars

• tensorflow/tensorflow

  An Open Source Machine Learning Framework for Everyone

  Language:C++185k7.6k39.7k74.2k

• tensorflow/models

  Models and examples built with TensorFlow

  Language:Python77k2.7k7.3k45.8k

• academicpages/academicpages.github.io

  Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

  Language:JavaScript11.7k9035742k

• mamba-org/mamba

  The Fast Cross-Platform Package Manager

  Language:C++6.7k481.7k347

• scverse/scvi-tools

  Deep probabilistic analysis of single-cell and spatial omics data

  Language:Python1.2k251k344

• COMBINE-lab/salmon

  🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

  Language:C++77040827161

• deweylab/RSEM

  RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

  Language:C++40822195118

• FelixKrueger/Bismark

  A tool to map bisulfite converted sequence reads and determine cytosine methylation states

  Language:HTML37915632101

• Battleman/zoomdl

  Download Zoom recorded meetings easily

  Language:Python340135844

• nanopony/keras-convautoencoder

  Keras autoencoders (convolutional/fcc) [proof of concept]

  Language:Python174131155

• yupenghe/methylpy

  WGBS/NOMe-seq Data Processing & Differential Methylation Analysis

  Language:Python13258948

• kdkorthauer/dmrseq

  R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing

  Language:R54106414

• Christensen-Lab-Dartmouth/MethylNet

  Modular framework for deep learning predictions on methylation data.

  Language:HTML4971511

• brentp/combined-pvalues

  combining p-values using modified stouffer-liptak for spatially correlated results (probes)

  Language:Python4343322

• araastat/reprtree

  Representative trees from ensembles

  Language:R4111533

• heathsc/gemBS

  gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (WGBS).

  Language:Python3259721

• FenyoLab/L1EM

  Estimate locus specific human LINE-1 expression.

  Language:Python3112139

• jimmyyhwu/deepsea

  DeepSEA in TensorFlow

  Language:Jupyter Notebook283216

• smaslova/AI-TAC

  Language:Python263111

• qlu-lab/SUPERGNOVA

  Language:Python2321510

• BenLangmead/bowtie-majref

  Scripts related to building major-allele references for Bowtie and Bowtie 2

  Language:Shell12531

• erilu/python-fastq-downloader

  A guide on how to find and download raw RNA-seq data from GEO. Batch download FASTQ files using a Python script and the NCBI SRA tools prefetch and fastq-dump.

  Language:Python12213

• reese3928/methylGSA

  A Bioconductor package and shiny app for DNA methylation data length bias adjustment in gene set testing

  Language:R10272

• alexpghayes/uw_madison_qual

  phd qualifying exams for uw-madison statistics 2010-2018

  9206

• stefangraw/pwrEWAS

  Language:R8266

• ThomasDCY/AdaLiftOver

  Adaptive LiftOver

  Language:R41

• heathsc/gemBS-rs

  A re-write of the gemBS pipeline framework in Rust

  Language:Rust32131

• cbreenmachine/methy-load

  Language:HTML20

• edwardslab-wustl/dxm

  Deconvolution of Methylation Sequencing Data

  Language:Python22

• andymadrid/R_scripts

  Language:R1