Issues
- 6
Call DMR using files in 10 bp bin format
#91 opened by Greacy-x - 1
- 3
methylpy 1.4.7
#90 opened by liyangyang12 - 7
Run DMRfind failed
#89 opened by DingWB - 2
methylpy single-end-pipeline error
#88 opened by hengbingao - 9
methylpy call-methylation-state
#87 opened by MagdalenaWinklhofer - 1
- 6
running reidentify-DMR on the DMRfind results
#85 opened by FarzanehRah - 7
Low percentage of uniquely mapping read pairs
#46 opened by GatorShan - 1
CpG
#84 opened by ShouWenWang - 2
methylpy has took long time.
#83 opened by Biomamba - 3
- 4
- 15
binom-test failed
#78 opened by Davieni4yashiro - 5
NAs of methylpy add-methylation-level result
#80 opened by liyangyang12 - 1
DMRfind-Histogram FDR correction did not converge.
#79 opened by nnlrl - 4
DMR
#77 opened by liyangyang12 - 7
Methylpy in plant
#76 opened by zzh4399 - 1
mapping to a large genome
#75 opened by awieeeee - 0
Help for parameters tuning.
#74 opened by ifishlin - 1
- 2
bam-quality-filter NOMe-seq
#72 opened by sherryxuePKU - 1
- 18
Running RMS tests failed.
#70 opened by chenji333 - 3
cutadapt error for methylpy v 1.4.6
#69 opened by shahsam - 21
run_test.py fails
#68 opened by rungitta - 2
DMRfinnd RMS issue
#49 opened by Papareddy - 11
- 0
Methylpy and Bismark for alignment
#64 opened by shengyongniu - 1
- 1
Average methylation level of a sample
#66 opened by connorrogerson - 2
DMRfind fails with key error 179
#67 opened by georgback - 4
multi-threading indexing?
#62 opened by yvnkm - 24
- 15
methylpy add-methylation-level issue
#53 opened by coralzhang - 4
multiple core problems
#61 opened by coralzhang - 1
PATH to Picard
#60 opened by olmath - 5
DMRfind Running RMS tests failed.
#59 opened by BTSARMY0613 - 6
add-methylation-level issue
#57 opened by WWJiaxuan - 2
default DMRfind --dmr_max_dist
#55 opened by shellywanamaker - 5
DMRfind with multiple repeats
#56 opened by coralzhang - 1
output file by add-methylation-level
#54 opened by WWJiaxuan - 12
add-methylation level not working
#48 opened by knoedlerj - 9
input files for add-methylation-level
#51 opened by WWJiaxuan - 4
- 5
DMRfind error during merging DMS to DMR
#50 opened by shahsam - 5
How are index files look like?
#44 opened by YibingZeng - 2
- 3
DMRfind problem
#43 opened by olmath - 3
problem loading picard
#42 opened by bigpocho