Pinned Repositories
BioPlex
R-side access to PPI data from Gygi lab
BioPlexAnalysis
Applications and downstream analysis of BioPlex PPI data
computervision
Everything to get started with computer vision
docker-rstudio-server
A repository for RStudio Server containers, with the goal of providing multi-architecture (ARM64 and AMD64) images.
HarvardInovalonUserGuide
User guide for Harvard's Inovalon resources.
HuBMAPy
A package to query the HuBMAP Human Reference Atlas Ontology
MerfishData
Collection of public MERFISH datasets
nhanes-database
ontology-mapper
a tool for mapping free-text descriptions of entities to ontology terms
phonto
PHenome - PHenome ONTOlogy for NHANES
Center for Computational Biomedicine's Repositories
ccb-hms/ontology-mapper-ui
ccb-hms/ollama-rag-workshop
Dockerized jupyter notebooks for doing retrieval-augmented generation with ccb's ollama instance. Part of the introductory ollama workshop.
ccb-hms/ollama-at-HMS
Documentation, scripts, tutorials, presentations, wikis, etc. that relate to running and interacting with text LLM models using `ollama` on HMS O2
ccb-hms/GWASCatalogSearchDB
ccb-hms/ontology-mapper-evaluation
Resources to reproduce the comparison of ontology mappings generated by text2term and selected benchmarks
ccb-hms/nhanes_stan
ccb-hms/nhanes-exploration
Exploring NHANES data through the nhanesA package
ccb-hms/stan_workshop_data
ccb-hms/faiss-cpu-docker-workbench
A dockerized Jupyter notebook for completing AI tasks with faiss, openai, and lang chain.
ccb-hms/nhanes-data
ccb-hms/getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
ccb-hms/HuBMAPy
A package to query the HuBMAP Human Reference Atlas Ontology
ccb-hms/OSCA.intro.qmd
ccb-hms/ccb-hms.github.io
ccb-hms/cachehttp
Caching of HTTP(S) resources
ccb-hms/immunology-bootcamp-2023
Materials for Systems Immunology R Bootcamp Fall 2023
ccb-hms/edw_acs
A Docker containerized API-based approach to download the Census Bureau's American Community Survey 5 Year Estimates
ccb-hms/openGWASSearchDB
ccb-hms/BioPlex
R-side access to PPI data from Gygi lab
ccb-hms/SqlServerS3Appliance
ccb-hms/systems-immunology-workshops
2023 Workshops to Accompany Systems Immunology Course
ccb-hms/Intro-to-R-Semisynchonous
A fork of the HBC's Intro to R workshop for a Semi-Synchronous Version hosted by the CCB.
ccb-hms/Intro-to-R-Synchonous
A fork of the HBC's Intro to R workshop to adjust the times and instructors for a CCB-hosted version.
ccb-hms/MutantHuntWGS
Bioinformatics pipeline for identification and characterization of mutations in Saccharomyces cerevisiae. Modified to run on SLUM clusters,
ccb-hms/openGWASSearch
An R package to provide free text search, and ontology lookup for openGWAS phenotypes
ccb-hms/hmc-clinic-2022-23
HMC clinic project 2022/23
ccb-hms/ontology-utilities
ccb-hms/edw_tiger
A docker containerized process for downloading Census TIGER line/shapefiles to sql server
ccb-hms/BioPlexAnalysis
Applications and downstream analysis of BioPlex PPI data
ccb-hms/MerfishDataAnalysis
Applications and downstream analysis of MERFISH data