Pinned Repositories
auto_metro
cataloger
Filling form for microscopy image annotations (on the biology side of things)
differential-expression_workflow
This workflow performs an RNA-seq analysis from the sequencing output data to the differential expression analyses.
impomero
Omero auto importer
Microbiome-Analysis-Workflow
This workflow performs a metabarcoding analysis from the reads sequencing to the production of a report presenting the graphical results.
napari-openlabframe
olf_control
omero-utils
python and jupyter scripts, widgets and utilities for interacting with omero
ProtruDe
Repository of ImageJ macros and plugins for detecting protrusion in the videos of SARS-CoV-2 spike protein, captured by high-speed atomic force microscope.
scRNAseq_analysis_workflow
Single-Cell RNA-seq analysis workflow for 10x Genomics data
CENTURI Multi-Engineering Platform's Repositories
centuri-engineering/auto_metro
centuri-engineering/cataloger
Filling form for microscopy image annotations (on the biology side of things)
centuri-engineering/impomero
Omero auto importer
centuri-engineering/ProtruDe
Repository of ImageJ macros and plugins for detecting protrusion in the videos of SARS-CoV-2 spike protein, captured by high-speed atomic force microscope.
centuri-engineering/bioimage_databases_course
A 6 hours master course on bioimage management and databases
centuri-engineering/napari-openlabframe
centuri-engineering/olf_control
centuri-engineering/ply-zarr
A zarr implementation of the PLY specification
centuri-engineering/syringe_drivers
centuri-engineering/differential-expression_workflow
This workflow performs an RNA-seq analysis from the sequencing output data to the differential expression analyses.
centuri-engineering/metrologist
centuri-engineering/Microbiome-Analysis-Workflow
This workflow performs a metabarcoding analysis from the reads sequencing to the production of a report presenting the graphical results.
centuri-engineering/scRNAseq_analysis_workflow
Single-Cell RNA-seq analysis workflow for 10x Genomics data
centuri-engineering/3D-ImageJ-Suite
centuri-engineering/AdoptOmero
centuri-engineering/BD_BlobsSeg
Fiji macro to segment blobs-like organelles
centuri-engineering/BD_EpiCellSeg
centuri-engineering/BioimageDatabaseCourse
centuri-engineering/clicket
Adaptation of https://github.com/evereux/flicket app to suit our needs
centuri-engineering/flask-video-streaming
Supporting code for my article on video streaming with Flask.
centuri-engineering/git_tuto
git tutorial and playground
centuri-engineering/jolo
Jupyter / voilĂ interface to OLOGRAM
centuri-engineering/metatranscriptomics-bulkrnaseq_workflow
This workflow performs a metatranscriptomics and bulk RNAseq analysis from the sequencing output data to the differential expression analyses.
centuri-engineering/motorized-stereotaxic-arm
centuri-engineering/omero-at-centuri
centuri-engineering/optoPlate-96
All design files and scripts necessary for the construction and use of the optoPlate-96
centuri-engineering/primer_deeplearning
some basics and tips for starting a DL project
centuri-engineering/smlm-zarr
centuri-engineering/Software_Python_OpenLabFram
centuri-engineering/wiki
our wiki