Issues
- 2
- 5
Kubernates integration
#111 opened by Acribbs - 0
sqlalchemy>=2
#173 opened by jscaber - 17
why sourcing the bashrc profile on cluster?
#172 opened by bio-la - 5
running local on macos time: illegal option -- -
#171 opened by bio-la - 7
running local on macos
#165 opened by bio-la - 6
- 7
Changing time requested for job
#168 opened by lucygarner - 3
Variable substitution in Ruffus decorator?
#155 opened by lucygarner - 5
- 1
Issue with BenchmarkData causing pipelines to stall.
#147 opened by jjriley1 - 0
Missing header in E.start() using optparse
#159 opened by AndreasHeger - 0
to_cluster=False in P.load
#162 opened by IanSudbery - 3
- 1
Do global variables need to be written in capitals in `cgat-core` pipelines?
#167 opened by lucygarner - 5
help overwriting SLURM default params
#164 opened by bio-la - 1
pipeline printing our options as the defaults
#152 opened by Acribbs - 1
missing pipeline action svg
#156 opened by AndreasHegerGenomics - 1
cgat-core not compatible with py3.10
#153 opened by AndreasHeger - 11
- 23
COmmand line arguments not overriding defaults
#132 opened by david-cgat - 6
How to add additional argument to qsub.
#150 opened by crichgriffin - 0
- 0
citation.cff file
#144 opened by sebastian-luna-valero - 1
Conda env can't be specified by directory
#136 opened by IanSudbery - 1
pytest failing with new v6.0.0
#129 opened by Acribbs - 3
two different conda pacakges
#131 opened by IanSudbery - 5
PBSPro error: drmaa.errors.InternalException: code 1: PBS is not configured to maintain job history
#122 opened by antoniojbt - 0
document virtual tsv module
#121 opened by Acribbs - 2
- 1
Depedency versions - pyyaml
#116 opened by IanSudbery - 22
Tests failing with Python 3.8
#105 opened by sebastian-luna-valero - 1
- 14
drmaa.errors.InvalidAttributeValueException
#102 opened by amayer21 - 1
The optparse module is deprecated
#96 opened by Acribbs - 6
- 4
- 0
- 0
- 2
collecting benchmark data pbspro
#83 opened by antoniojbt - 10
installation test errors
#69 opened by antoniojbt - 9
Time stamps not updating on rerun tasks
#75 opened by IanSudbery - 1
Update docs
#67 opened by Acribbs - 1
Torque implementation incomplete
#62 opened by IanSudbery - 2
Memory usage by Tables.concatenate_tables
#52 opened by IanSudbery - 4
Error during installation of cgat-core
#59 opened by kevinrue - 0
cgat-core executable no longer available
#57 opened by jscaber - 0
- 2
update and now issues running pipelines
#51 opened by Acribbs - 1
tmpdir missing parameter accessed
#50 opened by Acribbs