chen1i6c04

chen1i6c04's Stars

• lllyasviel/stable-diffusion-webui-forge

  Language:Python10.3k1001.7k1.1k

• jsvine/pdfplumber

  Plumb a PDF for detailed information about each char, rectangle, line, et cetera — and easily extract text and tables.

  Language:Python7.5k93580716

• msiemens/tinydb

  TinyDB is a lightweight document oriented database optimized for your happiness :)

  Language:Python7k106323559

• erikgahner/awesome-ggplot2

  A curated list of awesome ggplot2 tutorials, packages etc.

  1.6k4616175

• patchy631/machine-learning

  Language:Jupyter Notebook1.4k395271

• biotite-dev/biotite

  A comprehensive library for computational molecular biology

  Language:Python76916209106

• Martinsos/edlib

  Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

  Language:C++53423181167

• nanoporetech/medaka

  Sequence correction provided by ONT Research

  Language:Python4434852379

• BioOmics/iSeq

  Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.

  Language:Shell17612712

• pha4ge/hAMRonization

  Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure

  Language:Python151206030

• wwood/singlem

  Novelty-inclusive microbial community profiling of shotgun metagenomes

  Language:Python140913818

• shenwei356/LexicMap

  LexicMap: efficient sequence alignment against millions of prokaryotic genomes

  Language:Go1383104

• steineggerlab/Metabuli

  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.

  Language:C++13164310

• hiruna72/squigualiser

  Visualise and analyse nanopore (ONT) raw signals

  Language:Python1124253

• shenwei356/perfect-bioinformatic-tools

  What should perfect bioinformatic tools be like?

  112511

• nanoporetech/pomoxis

  Analysis components from Oxford Nanopore Research

  Language:Python93314123

• art-egorov/lovis4u

  Bioinformatics tool for Locus Visualisation

  Language:Python922223

• pawjast/code_and_pepper

  🐍 code I post on the web

  Language:Jupyter Notebook92302

• xiezhq/ISEScan

  A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome

  Language:Python9145416

• zhaoxiaofei/bindash

  Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop

  Language:C++594127

• moshi4/phyTreeViz

  Simple phylogenetic tree visualization python package for phylogenetic analysis

  Language:Python48250

• JensUweUlrich/Taxor

  Fast and space-efficient taxonomic classification of long reads

  Language:C++432142

• chanzuckerberg/czid-workflows

  Portable WDL workflows for CZ ID production pipelines

  Language:Python411197

• NBChub/bgcflow

  Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)

  Language:Python4122169

• michaelkyu/PlasX

  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture

  Language:Python33291

• xinehc/melon

  Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes

  Language:Python33161

• treangenlab/lemur

  Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets

  Language:Python24341

• pawjast/medium

  Code for my Medium articles

  Language:Jupyter Notebook22205

• ylab-hi/pxblat

  PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT

  Language:C172190

• mourisl/MSAplot

  Plot multiple sequence alignment (MSA)

  Language:Jupyter Notebook14101