nanoporetech/pomoxis

Issues

• Issues with split_fastx command using pomoxis assem_assembly

  #52 opened 7 months ago by tweilin
  0

• porechop installation fails

  #50 opened 8 months ago by jstraubhr
  1

• `split_fastx` on fastq files

  #48 opened 3 years ago by chAwater
  2

• medaka requires pomoxis in order to run :: mini_align name conflict

  #49 opened 3 years ago by EricDeveaud
  1

• long_fastx does not generate the other_*.fa file

  #47 opened 3 years ago by emiracherif
  3

• Assess_assembly documentation

  #46 opened 3 years ago by mpalmada
  3

• ZeroDivisionError: float division by zero

  #45 opened 3 years ago by shernadi
  1

• Assess_assembly Documentation

  #30 opened 5 years ago by nhartwic
  5

• "intersect_assembly_errors" program runs too long a time without a finish

  #44 opened 4 years ago by yipukangda
  0

• [bug] Running catalogue_errors then get 'ValueError: MD tag not present'

  #43 opened 4 years ago by yipukangda
  2

• Cannot make pomoxis - 403 Forbidden

  #42 opened 4 years ago by CFmicro
  0

• mini_assemble empty target sequences error

  #33 opened 5 years ago by kautto
  3

• Python 3.7?

  #41 opened 4 years ago by BrianaGross
  4

• mini_assemble core dump

  #40 opened 5 years ago by ccbruels
  1

• Error downloading porechop?

  #20 opened 5 years ago by ScarabMonkey
  7

• Requesting feature: give option to exclude long indels from assess assembly bam_stats.

  #36 opened 5 years ago by kishwarshafin
  7

• pomoxis assess assembly `-T` parameter without `-b` gives an error.

  #32 opened 5 years ago by kishwarshafin
  5

• mini_assemble on short reads.

  #31 opened 5 years ago by cjw85
  2

• Tracing issues with racon after running mini_assemble

  #23 opened 6 years ago by beasty1711
  6

• pomoxis installation

  #34 opened 5 years ago by xinghai999
  3

• Installation error

  #22 opened 6 years ago by JesseBNL
  1

• Bulk .fast5 datasets

  #3 opened 6 years ago by svkazakov
  1

• Installing with Conda issues (unlisted dependencies). Git clone issue

  #19 opened 6 years ago by LarsDu
  4

• Running mini_assemble with large, high coverage fastq file

  #29 opened 6 years ago by avitalsteiman
  5

• Installing pomoxis on MacOS Mojave (10.14.2)

  #28 opened 6 years ago by Ekrates
  2

• Mini_assemble issue in line 188 specifying # threads

  #21 opened 6 years ago by ccbruels
  1

• minimap2 doesn't work

  #26 opened 6 years ago by avitalsteiman
  5

• installation error - porechop

  #25 opened 6 years ago by mjfi2sb3
  9

• Problem with running poxomis

  #24 opened 6 years ago by ookil
  2

• numpy 1.14.2 is installed but numpy<=1.13.3 is required by {'fast5-research'}

  #18 opened 6 years ago by MMicorescu
  1

• Install on mac OSX

  #17 opened 6 years ago by strnadja
  3

• Installation problems

  #16 opened 7 years ago by weedcentipede
  1

• Basecalling raw signal with pyscrap.py

  #11 opened 7 years ago by svkazakov
  3

• missing dependencies

  #12 opened 7 years ago by jamestwebber
  2

• mini_assemble command shows minimap error

  #13 opened 7 years ago by RajneeshSrivastava
  1

• dependency on numpy 1.9.0 makes the build process take a long time..

  #14 opened 7 years ago by jamestwebber
  1

• numpy

  #6 opened 7 years ago by mattloose
  1

• which python version needed?

  #9 opened 7 years ago by barak2
  0

• where should i clone pomoxis?

  #8 opened 7 years ago by barak2
  1

• Cannot open include file: 'dirent.h'

  #7 opened 7 years ago by barak2
  1

• Modification for other data structure

  #1 opened 7 years ago by ban-m
  2