chr1swallace/coloc

Issues

• Interpretation on SNP.PP.H4

  #112 opened 2 years ago
  2

• coloc.abf result: unexpectedly high PP.H4.abf

  #111 opened 2 years ago
  4

• Results from coloc.abf

  #110 opened 2 years ago
  3

• Can the LD matrix have more SNPs in it than the merged GWAS-eQTL file?

  #109 opened 2 years ago
  0

• Varbeta for eQTL and GWAS dataset

  #108 opened 2 years ago
  5

• N argument missing when calling susieR::susie_rss()

  #107 opened 2 years ago
  20

• Bug in code to set up sample size argument to pass to susie_rss

  #106 opened 2 years ago
  1

• res$summary shows PP.H2.abf=1 AND PP.H4.abf=1

  #105 opened 2 years ago
  4

• "prior variance is unreasonably large" error when using runsusie() with a "cc" type dataset.

  #104 opened 2 years ago
  1

• coloc.susie: warning about providing sample size

  #103 opened 2 years ago
  7

• Question about sdY

  #102 opened 2 years ago
  1

• MAF score from GWAS results using COLOC.susie as well as LD matrix question

  #101 opened 2 years ago
  12

• Discordant output from coloc.abf with beta/varbeta input vs estimation from p-value input

  #100 opened 2 years ago
  3

• PP global H4 vs PP snp H4

  #99 opened 2 years ago
  1

• How to interpret coloc.susie results with two different variants in low LD?

  #98 opened 2 years ago
  6

• Output returns NaN

  #97 opened 2 years ago
  1

• Error when using coloc 5.2.0 version

  #96 opened 2 years ago
  11

• coloc.signals with 'cond' method is nto working properly

  #95 opened 2 years ago
  7

• Runsusie returns null credible set

  #94 opened 2 years ago
  6

• HLA imputation and SUSIE

  #93 opened 2 years ago
  1

• Error installing coloc

  #92 opened 2 years ago
  1

• Error in if (min(p) > warn.minp) warning("minimum p value is: ", format.pval(min(p)),

  #91 opened 2 years ago
  1

• runsusie: taking too much iterations to reach convegence

  #90 opened 2 years ago
  9

• Issue with plotting

  #89 opened 2 years ago
  4

• Run coloc.abf for multiple loci together with for loop or other alternatives

  #88 opened 3 years ago
  3

• How to get gene level H4?

  #87 opened 2 years ago
  5

• Error while running moloc

  #86 opened 3 years ago
  6

• How to find H0 to H3 from the coloc.abf output for each snp

  #85 opened 3 years ago
  1

• How to interpret coloc.susie results with two different variants but has very high PP.H4.Prob?

  #84 opened 3 years ago
  3

• coloc.abf with eQTLgen and GWAS data errors

  #83 opened 3 years ago
  8

• coloc.detail, coloc.process function not found (coloc 5.1.2)

  #82 opened 3 years ago
  5

• Preparing data for 'CC' and 'quant' traits, tried but getting error

  #81 opened 3 years ago
  10

• error in coloc.abf

  #79 opened 3 years ago
  1

• Clarification of `null_weight` argument passed to `susie_rss()`

  #77 opened 3 years ago
  4

• SNP.PP.H4

  #76 opened 3 years ago
  1

• dependency irlba requires R >= 3.6.2

  #75 opened 3 years ago
  1

• A possible typo in "data structure" wiki?

  #74 opened 3 years ago
  1

• Little confusion about required coloc inputs

  #73 opened 3 years ago
  5

• check_dataset

  #72 opened 3 years ago
  17

• cannot run Susie for colocalisation between GWAS and eQTL

  #71 opened 3 years ago
  5

• question about PP.H3

  #68 opened 3 years ago
  15

• coloc.abf returns NaN for all posteriors

  #65 opened 3 years ago
  5

• "prior variance is unreasonably large" error when using runsusie()

  #64 opened 3 years ago
  7

• choosing an optimal LD reference panel for multi-ancestry GWAS

  #63 opened 3 years ago
  4

• PP.H4 results for coloc.susie()

  #61 opened 3 years ago
  2

• Encounter "dataset 1: lengths of inputs don't match error"

  #60 opened 3 years ago
  4

• LD matrix

  #59 opened 3 years ago
  13

• Installation with install_github

  #58 opened 3 years ago
  0

• Warning in coloc.susie

  #57 opened 3 years ago
  5

• Checking whether dataset is a list

  #56 opened 3 years ago
  0