chris-mcginnis-ucsf/DoubletFinder
R package for detecting doublets in single-cell RNA sequencing data
R
Issues
- 17
- 0
result of modelHomotypic(NULL) is 0
#211 opened by hel404 - 4
Error seu@assays$RNA$counts : $ operator not defined for this S4 class. for doubletFinder( )
#207 opened by chingyaousf - 1
assumed % doublet formation rate
#210 opened by JoannaG88 - 1
Quiet verbose for paramSweep
#209 opened by AlicenJoyHenning - 1
- 4
- 0
Error message with DoubleFinder:Error in RunPCA(seu_wdoublets, npcs = length(PCs)) : unused argument (npcs = length(PCs))
#206 opened by anitalakatos - 2
Can you provide the old version 2.0.3
#186 opened by RunhanZhao - 0
doubletFinder for BCR?
#205 opened by saramoein372 - 2
install failed
#204 opened by QIiiiiiii1 - 0
- 0
Number of doublets is equal to nExp
#201 opened by der4005 - 1
bcmvn<-find.pK(sweep.stats) NULL
#199 opened by ramikheireddine - 12
Doubletfinder in Seurat v5
#171 opened by lisch7 - 1
- 11
Error in paramSweep_v3(scRNA_r, PCs = 1:30, sct = FALSE) : could not find function "paramSweep_v3"
#184 opened by skkanlei - 0
Removing only some doublets with DoubletFinder
#198 opened by cetinsz - 1
- 0
Error in [seu@meta.data](mailto:seu@meta.data) : no applicable method for @ applied to an object of class "list"
#197 opened by Drizzle63 - 1
- 0
Error with FindDoublets::paramSweep
#196 opened by kunleng - 2
add pANN scores to cell metadata
#195 opened by thayerr - 4
Subscript out of bounds - Running parameter sweep
#182 opened by rahmaqadeer - 4
- 5
Issue with name attribute and vector?
#159 opened by pdimitron - 2
unused argument (sct = FALSE) in paramSweep
#194 opened by lizh0205 - 4
Error in ParamSweep
#193 opened by igs0011 - 3
ERROR IN '''no slot of name "counts" for this object of class "Assay5" '''
#190 opened by 12231366ostun - 7
Seurat v3/v4 compatibility in new release
#175 opened by bobermayer - 0
Error in installation
#188 opened by ppkaaqq - 9
Script for doublet finder with seurat 5
#177 opened by synatkeamsk - 0
Error in h(simpleError(msg, call)) : error in evaluating the argument 'x' in selecting a method for function 't': missing value where TRUE/FALSE needed
#187 opened by hlcxq1223 - 0
not recognizing that there are multiple clusters
#185 opened by olneykimberly - 3
paramsweep error
#178 opened by bykovam - 2
Issue when running paramSweep on multiple cores
#180 opened by Cleiti - 0
summarizeSweep error
#179 opened by msaezpal - 5
Doublet finder did not work with SCTransform in my single sample analysis
#170 opened by synatkeamsk - 4
doubletfinder seuratv5 layers
#173 opened by yamihn - 0
Doublet finder
#167 opened by synatkeamsk - 11
- 2
Seurat V5
#166 opened by anemartinezlarrinaga2898 - 1
parallel_paramSweep_v3 error
#168 opened by BenxiaHu - 1
paramSweep question
#169 opened by Starlord3796 - 1
Can I perform doublet finder on merge seurat object?
#174 opened by synatkeamsk - 1
Question about pANN calculation
#165 opened by jg9zk - 1
RunPCA Error: irlba(A = t(x = object), nv = npcs, ...) : BLAS/LAPACK routine 'DLASCL' gave error code -4
#162 opened by levinhein - 2
Problem with using num.cores parameter
#163 opened by dariotommasini - 1
Error in orig.commands$NormalizeData.RNA@params : no applicable method for `@` applied to an object of class "NULL"
#164 opened by dpitlor - 0
support for Seurat v5
#160 opened by ayyildizd