chuttenh

Pinned Repositories

• biobakery

  bioBakery tools for meta'omic profiling

  Language:Shell269164875

• ccrepe

  The CCREPE (Compositionality Corrected by REnormalizaion and PErmutation) package is designed to assess the significance of general similarity measures in compositional datasets.

  Language:R4800

• homebrew-biobakery

  Biobakery formulae for the Homebrew package manager

  Language:Ruby115394

• kneaddata

  Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.

  Language:Python11482029

• maaslin

  MaAsLin is a multivariate statistical framework that finds associations between clinical metadata and potentially high-dimensional experimental data.

  Language:R7701

• Maaslin2

  MaAsLin2: Microbiome Multivariate Association with Linear Models

  Language:R13182135

• micropita

  Language:Python3701

• shortbred

  ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then search for these markers in metagenomic data and determine the presence and abundance of the protein families of interest.

  Language:Python287125

• stamps2019

  Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA

  Language:HTML351607

• picrust

  Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tests

  Language:Python901912339

chuttenh's Repositories