picrust/picrust

Issues

• Not able to istall picrust on Ubuntu20

  #269 opened 9 months ago by mavino
  0

• Collapse predictions into pathways

  #267 opened 4 years ago by ThuyTienOkadai
  0

• ValueError: could not convert string to float: k__Bacteria

  #266 opened 5 years ago by MarwaElnaiem
  0

• Categorize by function fails on galaxy

  #253 opened 7 years ago by maxf130
  6

• Error: cannot import name parse_table

  #264 opened 5 years ago by chikalll
  11

• Update the taxonomic and functional databases

  #221 opened 5 years ago by omanor
  6

• Update functional predictions for newly completed genomes

  #183 opened 5 years ago by mlangill
  1

• Enable PICRUSt to be used with de-novo OTUs

  #182 opened 5 years ago by mlangill
  1

• 'NoneType' object is not iterable in Categorize by function

  #260 opened 6 years ago by panbbq
  8

• Normalize OTU Table One or more OTU ids were not found in the precalculated file!

  #258 opened 6 years ago by JiruHan
  13

• compare_biom.py ValueError: too many values to unpack

  #257 opened 6 years ago by apascualgarcia
  4

• Update 16S copy number predictions

  #184 opened 10 years ago by mlangill
  2

• high memory requirements of `metagenome_contributions.py`

  #202 opened 8 years ago by mortonjt
  1

• Single CPU `hugging` for ancestral_state_reconstruction.py ?

  #254 opened 7 years ago by zanhsieh
  2

• [bug report] missing h5py in setup.py

  #245 opened 7 years ago by gengjiawen
  2

• update install documentation to recommend conda

  #234 opened 7 years ago by colinbrislawn
  1

• Make a picrust conda recipe

  #199 opened 7 years ago by colinbrislawn
  14

• Automatically download pre-calculated files during install

  #207 opened 7 years ago by gavinmdouglas
  2

• Duplicate sample ID error with categorize_by_function

  #224 opened 7 years ago by JCSzamosi
  0

• Does metagenome_contribution work with other greengenes version?

  #211 opened 8 years ago by AndreaQ7
  0

• Better integration tests

  #208 opened 8 years ago by zaneveld
  0

• namespace conflict with start_parallel_*.py when installing QIIME and PICRUSt simultaneously

  #157 opened 8 years ago by zaneveld
  1

• PICRUSt broken with BIOM 2.0

  #170 opened 8 years ago by stelllaras
  7

• Documentation update: predict metagenomes NSTI values clarification

  #160 opened 8 years ago by zaneveld
  2

• Update documentation for picrust to humann2

  #201 opened 8 years ago by SophieS9
  0

• Allow metagenome_contributions.py to operate on pathways rather than just gene family IDs

  #158 opened 8 years ago by zaneveld
  1

• precalculated files unavailable; not downloaded in default installation

  #196 opened 8 years ago by ksdiaz
  1

• Update dependencies

  #168 opened 8 years ago by audy
  2

• installation instructions are incorrect

  #176 opened 8 years ago by audy
  2

• categorize_by_function.py is broken BIOM 2.X

  #195 opened 9 years ago by mlangill
  0

• PICRUSt cannot work after update the QIIME 1.9

  #185 opened 9 years ago by binma
  2

• Add GreenGenes 13.8 to Galaxy PICRUSt?

  #187 opened 9 years ago by AmandaBirmingham
  2

• Select genomes to sequence by NSTI

  #190 opened 9 years ago by zaneveld
  0

• Uninformative error message when samples lack counts

  #186 opened 9 years ago by zaneveld
  0

• Document open reference otu picking --> filtering route for PICRUSt inputs

  #173 opened 10 years ago by zaneveld
  0

• Dead link in the documentation: qiime_to_maaslin

  #175 opened 10 years ago by zaneveld
  0

• URL to KEGG Ortholog Predictions is wrong

  #180 opened 10 years ago by sgivan
  0

• Metagenome variance calculation might be off

  #177 opened 10 years ago by wasade
  0

• Null byte in argument

  #154 opened 11 years ago by wasade
  9

• Specify dependencies in setup.py

  #166 opened 11 years ago by audy
  3

• scale_metagenome.py documentation doesn't match actual API

  #159 opened 11 years ago by audy
  2

• Example usage for `scale_metagenomes.py` is the usage banner for `predict_metagenomes.py` by mistake

  #152 opened 11 years ago by audy
  1

• Check for data files prior to processing

  #153 opened 11 years ago by wasade
  2

• categorize_by_function.py should provide an informative error if the category is missing

  #149 opened 11 years ago by zaneveld
  0

• [Minor] Documentation references /picrust/data/ folder, but none is present on initial download.

  #148 opened 11 years ago by zaneveld
  0

• GG 13 5 OTUs download link

  #134 opened 11 years ago by wasade
  0

• Greengenes typo

  #136 opened 11 years ago by wasade
  0

• No need to repick against GG/IMG

  #135 opened 11 years ago by wasade
  0

• Host precalculated files on thebeast

  #137 opened 11 years ago by wasade
  1

• Tutorial uses OTU table from older gg release

  #140 opened 11 years ago by mlangill
  0