Pinned Repositories
angsd_pipeline
assembly_SV
A pipeline used to detect structural variants between two de novo assemblies of Lake Whitefish (dwarf vs. normal)
coelopa_fastsim
Coelopa inversion selection simulation in Rust
gawn
Genome Annotation Without Nightmares
genotyping_SV
Genotype SV in multiple samples sequenced with short-reads, using a catalog of SV
Intro2PopGenomics
Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts
lepmap3_pipeline
physalia_adaptation_course
selection_analysis
SR_SV
detecting SVs based on shorts-reads
clairemerot's Repositories
clairemerot/angsd_pipeline
clairemerot/physalia_adaptation_course
clairemerot/assembly_SV
A pipeline used to detect structural variants between two de novo assemblies of Lake Whitefish (dwarf vs. normal)
clairemerot/lepmap3_pipeline
clairemerot/Intro2PopGenomics
Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts
clairemerot/genotyping_SV
Genotype SV in multiple samples sequenced with short-reads, using a catalog of SV
clairemerot/selection_analysis
clairemerot/gawn
Genome Annotation Without Nightmares
clairemerot/SR_SV
detecting SVs based on shorts-reads
clairemerot/coelopa_fastsim
Coelopa inversion selection simulation in Rust
clairemerot/Corvid_SVpopgen
clairemerot/giraffe-sv-paper
clairemerot/go_enrichment
Transcripts annotation and GO enrichment Fisher tests
clairemerot/local_pca
Methods for examining PCA locally along the genome.
clairemerot/long_read_SV
Scripts for refining vcf
clairemerot/MUMandCo
clairemerot/PopGenCode
Various bits of code for population genetic methods used in my publications
clairemerot/signet
An R package to detect selection in biological pathways
clairemerot/stacks_workflow
RADseq workflow built around STACKS
clairemerot/wgs_sample_preparation
Trim, Align to genome, Deduplicate, Realign WGS sequencing samples
clairemerot/Wold_PhD_thesis
Presented here are the tools and strategies implemented for short-read SV discovery (Chapter 3), a population genomics study (Chapter 4) and genome graph construction (Chapter 5).