cmf1997

cinaR-cmf

A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)

NC_plot

Code Associated with the Nature Communications Publication entitled "Single-cell analysis reveals prognostic fibroblast subpopulations linked to molecular and immunological subtypes of lung cancer"

RNA-ATAC-analysis

analysis bulk atac seq data

tfnet

chip-seq-pipeline2

ENCODE ChIP-seq pipeline

dnase-seq-pipeline

ENCODE DNase-seq pipeline

cinaR

A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)

harmony

Fast, sensitive and accurate integration of single-cell data with Harmony

bigmhc

BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity

scFAN

Predicting transcription factor binding in single cells through deep learning

cmf1997/RNA-ATAC-analysis

analysis bulk atac seq data

cmf1997/cinaR-cmf

A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)

cmf1997/NC_plot

Code Associated with the Nature Communications Publication entitled "Single-cell analysis reveals prognostic fibroblast subpopulations linked to molecular and immunological subtypes of lung cancer"

cmf1997/tfnet