common-workflow-language/cwltool

Issues

• How to add the -- shm-size parameter at runtime

  #1821 opened 10 months ago
  6

• cwltool:ProcessGenerator output

  #1819 opened 2 years ago
  2

• Resource requirements fail if user does division (float vs int)

  #1816 opened 2 years ago
  1

• Implement CWL Conformance CI tests on MacOS X

  #1815 opened 2 years ago
  0

• ExpressionTool doesn't check output types

  #1811 opened 2 years ago
  2

• Bad URN-scheme for `urn:hash::sha1:`

  #1806 opened 2 years ago
  1

• Problem with when statements in the workflow: nonetype input for scatter

  #1800 opened 2 years ago
  3

• document CUDA Requirement extension

  #1799 opened 2 years ago
  0

• Do not copy in-place updated files to output directory

  #1790 opened 2 years ago
  0

• Inputs containing both directories and files within directories fail to get mounted to correct places for CWL >= 1.1 workflows

  #1789 opened 2 years ago
  0

• If a workflow step input has a type of `[File, Directory]`, spurious warnings are emitted

  #1788 opened 2 years ago
  0

• cwltool: Step using InplaceUpdate conflicts with still active readers from an already finished job

  #1785 opened 2 years ago
  7

• type checking: optional enum source with an optional string sink?

  #1780 opened 2 years ago
  0

• readme: incorrect URLs in udocker & singularity examples

  #1777 opened 2 years ago
  4

• Can not model/print RDF without running the workflow

  #1774 opened 2 years ago
  2

• Unclear development requirements

  #1770 opened 2 years ago
  4

• cwl_utils.errors.JavascriptException: NodeJSEngine requires Node.js engine to evaluate and validate Javascript expressions, but couldn't find it.

  #1767 opened 2 years ago
  1

• cwltool --print-deps fails with workflows having namespaced location steps

  #1765 opened 2 years ago
  3

• NetworkAccess requirement not applicable in cwltool:overrides

  #1754 opened 2 years ago
  12

• Presigned urls for files doesn't work when cwltool:overrides is also present in input.json

  #1753 opened 2 years ago
  0

• CWLProv: weird "cwlprov:None" entity

  #1752 opened 2 years ago
  1

• CWLProv: secondary files missing from RO

  #1751 opened 2 years ago
  3

• CWL Tool Output and Error Capturing Behaviour

  #1750 opened 2 years ago
  3

• Allow interpreted subclasses

  #1745 opened 2 years ago
  2

• CUDARequirement: is GPU min/max memory required?

  #1744 opened 2 years ago
  1

• Missing cwl-utils dependency when installing from conda (but not pip)

  #1743 opened 2 years ago
  1

• CWLProv: missing information in run with nested workflow

  #1741 opened 2 years ago
  0

• Detect missing MultipleInputFeatureRequirement during validation

  #1740 opened 2 years ago
  1

• working-fine wf breaks when running with the `--provenance` argument

  #1738 opened 2 years ago
  6

• use unshare to enforce `networkAccess: false` when not running in a container

  #1733 opened 2 years ago
  8

• cwltool accidentally overwrites the contents of the file with `writable: false`

  #1731 opened 2 years ago
  0

• Provenance switch to cwl_utils.pack

  #1728 opened 2 years ago
  0

• galaxy-tool-util release 22 breaks cwltool

  #1722 opened 2 years ago
  0

• https://w3id.org/cwl/CommonWorkflowLanguage.yml returns 404

  #1719 opened 2 years ago
  1

• enhance workflow checker to mandate that scatter'd inputs be of type array

  #1713 opened 2 years ago
  0

• No module named 'pwd'

  #1696 opened 2 years ago
  2

• Traceback with a workflow with only cwlVersion, class, and empty inputs and outputs

  #1695 opened 2 years ago
  0

• tox native codegen unused variables

  #1694 opened 2 years ago
  4

• CWLProv: cannot reproduce workflow runs with Directory input

  #1693 opened 2 years ago
  2

• Incorrect timestamps in provenance when running --provenance together with --cachedir

  #1689 opened 2 years ago
  0

• --help output when input requirements are not met

  #1688 opened 2 years ago
  1

• Suppress workflow warnings

  #1687 opened 2 years ago
  1

• SchemaDefRequirement producing ordereddict in output

  #1684 opened 2 years ago
  0

• Timer is causing silent failure of ExpressionTool

  #1680 opened 2 years ago
  2

• Field is not valid: CommentedSeq expected null or string

  #1673 opened 2 years ago
  3

• Capture last modification date of remote file

  #1672 opened 2 years ago
  0

• Scatter before a when occurs

  #1668 opened 3 years ago
  2

• Avoid downloading expression tool inputs and outputs to disk?

  #1666 opened 3 years ago
  0

• CWLProv cached runs

  #1664 opened 3 years ago
  1

• --beta-conda-dependencies needs better (debug) logging

  #1660 opened a year ago
  1