compomics/searchgui

Issues

• support for sage variable and fixed modifications by mass

  #369 opened a year ago by kostrouc
  0

• Java VM support

  #368 opened a year ago by mknierman
  1

• SearchGUI + X!Tandem results in some peptides not ending in K or R

  #367 opened a year ago by prao123
  3

• Comet -- Error: No index found for enzyme Trypsin.

  #366 opened a year ago by jeffsocal
  6

• Trypsin digestion, sequence not ends with "KR" and at the end of a protein sequence

  #365 opened a year ago by ATPs
  2

• File Extension Mismatch in ThermoRawFileParser Conversion Using SearchGUI

  #364 opened a year ago by jacobfh1
  1

• Search failures with searchcli docker

  #363 opened a year ago by fiuzatayna
  2

• Getting a java.lang.NullPointerException when running searchGUI in a container

  #362 opened a year ago by steve-lefever
  8

• I cannot add my database into SearchGUI

  #360 opened a year ago by hooria123333
  1

• Getting 'Failed to write to the log report file' when running Search CLI

  #353 opened a year ago by Michal-Babins
  6

• How to configure fractions in PeptideShaker

  #361 opened a year ago by kazbek966
  1

• Issues with Andromeda vs other search engines

  #359 opened a year ago by photocyte
  2

• SearchGUI does not download

  #358 opened a year ago by mi3-14
  2

• MS file exceeds memory mapped reader max buffer size.

  #356 opened a year ago by milnus
  1

• Search hangs on "Converting Spectrum file xxxxx.mgf to peak list" even using most up to date Java

  #357 opened a year ago by nCeon
  0

• Failed to start getMemoryParameter()

  #355 opened a year ago by JesusCastano01
  3

• Different results got from MS Amanda2.0 standalone and SearchGUI.

  #350 opened 2 years ago by JuneCoco
  4

• MSGFPlus.jar is zero length in SearchGUI-4.2.16-mac_and_linux.tar.gz

  #354 opened 2 years ago by photocyte
  4

• Integration with Sage

  #334 opened 2 years ago by lazear
  53

• Could SearchGUI write somewhere else than in SearchGUI-4.2.8/resources/(conf | temp) ?

  #349 opened 2 years ago by max-l
  14

• Hello, I am graduate student using peptide shaker.

  #347 opened 2 years ago by kyungsikshi
  1

• searchgui for pepsin data

  #351 opened 2 years ago by biocc
  1

• parameters file not generated

  #352 opened 2 years ago by esraaelmligy
  1

• An issue using MSAmanda2.0 within the SearchGUI.

  #348 opened 2 years ago by JuneCoco
  2

• tide: Wrote peptides to temp files takes extremely long time

  #346 opened 2 years ago by KKKKK-tech
  7

• sage is really slow and peptide shaker won't open the output

  #343 opened 2 years ago by justmpm
  8

• omssa: not enough peaks in spectra

  #345 opened 2 years ago by danyunghsu
  2

• error with mzML file

  #344 opened 2 years ago by danyunghsu
  4

• Installation issue of searchGui with Java

  #329 opened 2 years ago by EmilieCarneiro
  2

• OMSSA issues

  #330 opened 2 years ago by carolinelennartsson
  1

• Multiple enzyme digestion

  #333 opened 2 years ago by carolinelennartsson
  13

• Search cancelled

  #339 opened 2 years ago by mdondrup
  11

• Does not work with me

  #341 opened 2 years ago by kailaw138
  2

• Hello I am a user using searching gui and peptide shaker.

  #342 opened 2 years ago by kyungsikshi
  3

• SearchGUI java error at start

  #340 opened 2 years ago by LaszloGyoery
  4

• Download site down, add mirror

  #338 opened 2 years ago by JohnsonDylan
  2

• Fasta Input With Wildcards Peptide Shaker

  #337 opened 2 years ago by kostrouc
  3

• Myrimatch was unable to complete the search

  #336 opened 2 years ago by KKKKK-tech
  2

• Question about FDR

  #335 opened 2 years ago by KKKKK-tech
  6

• SearchCLI: MS-GF+ options

  #332 opened 2 years ago by tivdnbos
  5

• Andromeda for linux

  #331 opened 2 years ago by carolinelennartsson
  2

• Error

  #320 opened 2 years ago by lpaul-BioAnalysis
  6

• Json file format

  #323 opened 2 years ago by profbiot
  2

• ERRor!!!

  #326 opened 2 years ago by pelintnp
  4

• Stuck on "Importing spectrum file"

  #328 opened 2 years ago by iquasere
  5

• Can't run searchGUI on Linux

  #327 opened 2 years ago by zys7777
  4

• About Non standard fasta issue

  #325 opened 2 years ago by kyungsikshi
  11

• Partial results only

  #324 opened 2 years ago by laurenfields
  4

• MetaMorpheus issue with TMT mods?

  #321 opened 3 years ago by jcanderan
  1

• Support for timsTOF data?

  #322 opened 3 years ago by hcadre
  1