computational-metabolomics/pmp

Issues

• dont supress warnings for knn imputation

  #29 opened 4 years ago by grlloyd
  0

• expand pqn filtering options

  #23 opened 4 years ago by grlloyd
  1

• use github actions instead of travis/appveyor

  #24 opened 4 years ago by grlloyd
  1

• glog offsets

  #22 opened 4 years ago by grlloyd
  1

• pqn coefficients and glog lambda cant be applied to validation data sets

  #18 opened 5 years ago by grlloyd
  2

• Make names of parameters consistent across functions and proofread text for @param

  #9 opened 5 years ago by RJMW
  1

• Check that matrices with one row are always stored as matrices and not vector

  #11 opened 5 years ago by andzajan
  1

• Check if ">" is replaced with ">=" where needed

  #8 opened 5 years ago by andzajan
  0

• filter_peaks_by_blank doesn't return error if input matrix contain's character converted in factor

  #13 opened 5 years ago by andzajan
  1

• Move checkNA from preparedData to separate funcation

  #12 opened 6 years ago by andzajan
  1

• In "doSummaryPlot" function check class labels and return warning/error if there are not enough data points to calculate RSD%

  #10 opened 6 years ago by andzajan
  1

• To try to unify all input and output to be in format: samples are columnwise and features row wise

  #2 opened 6 years ago by andzajan
  1

• Blank filter filters only on fold change, doesn’t check fraction

  #4 opened 6 years ago by andzajan
  1

• Include an additional check for the pmp package that checks if the samples names and class names match with the matrix

  #7 opened 6 years ago by andzajan
  1

• Missing dependancy pcaMethods

  #1 opened 6 years ago by grlloyd
  3