cthoyt

On sabbatical - unable to respond

@northeasternBonn, Germany

Pinned Repositories

bioregistry
📮 An integrative registry of biological databases, ontologies, and nomenclatures.
Language:Python120 9 53053
pyobo
📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
Language:Python61 3 11215
chembl-downloader
Write reproducible code for getting and processing ChEMBL
Language:Jupyter Notebook69 4 412
class-resolver
🔍 Lookup classes and instantiate them with style
Language:Python63 4 149
cookiecutter-snekpack
🍪 A cookiecutter package for an enlightened python package
Language:Python36 4 217
drugbank-downloader
Don't worry about DrugBank licensing - write code that knows how to download it automatically
Language:Python39 3 28
pystow
👜 Easily pick a place to store data for your Python code.
Language:Python36 4 236
umls_downloader
Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically
Language:Python33 2 34
pybel
🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)
Language:Python131 9 39432
pykeen
🤖 A Python library for learning and evaluating knowledge graph embeddings
Language:Python1.7k 27 553189

cthoyt's Repositories

cthoyt/flagman
Perform arbitrary actions on signals.
Language:Python1 3 0
cthoyt/pyrdb2rdf
A Python library for RDB2RDF Direct Mapping and R2RML.
Language:Python1
cthoyt/pyuniprot
Python package to query and analyse UniProt
Language:Python1 3 0
cthoyt/schoolwork
✎ Code I've written for classes in school
Language:Racket1
cthoyt/ssbio
A Python framework for structural systems biology
Language:Python1 3 0
cthoyt/b2
Bertini 2.0: The redevelopment of Bertini in C++.
Language:C++
cthoyt/baton
Baton is a Composer dependency analytics tool which helps you keep track of the Composer dependencies in your PHP projects.
Language:PHP
cthoyt/Bioinformatics-Conference-Bingo
cthoyt/celery-with-flask-factories
Language:Python
cthoyt/chemtools
⚗Cool stuff for undergraduate chemistry classes
Language:Python
cthoyt/CMPO
Cellular Microscopy Phenotype Ontology
cthoyt/EBNFSpill
Create Random Data based on EBNF Syntax description (EBNF parser: simpleparse)
Language:Python
cthoyt/flask-appconfig
Configures Flask applications in a canonical way. Also auto-configures Heroku. Aims to standardize configuration.
Language:Python
cthoyt/flask-security-testing-demo
A short demo how to test with logged-in users in Flask-Security
Language:Python
cthoyt/fuckitpy
The Python error steamroller.
Language:Python
cthoyt/ged4py
Implementation of a graph edit distance in python
Language:Python
cthoyt/git-rekt
Sometimes repositories just need to git rekt
Language:Shell
cthoyt/homebrew-cask
A CLI workflow for the administration of Mac applications distributed as binaries
Language:Ruby
cthoyt/indra-machines
Several configuration files for biomedical relation extraction with INDRA
Language:Python
cthoyt/OntoSpy
Inspect and visualise RDF ontologies.
Language:HTML1
cthoyt/pushover_complete
A Python package for interacting with *all* aspects of the Pushover API.
Language:Python
cthoyt/pycoin
pycoin is a command line utility to semi-randomly choose a movie to watch from the list of movies you would like to see.
Language:Python
cthoyt/pyhgnc
Language:Python
cthoyt/rdb2rdf2web
Maps RDB to RDF and exposes SPARQL API
Language:Python1
cthoyt/requests-file
Transport adapter for fetching file:// URLs with the requests python library
Language:Python
cthoyt/synapsePythonClient
Programmatic interface to Synapse services for Python
Language:Python