cvdelannoy
Bioinformatics PhD candidate. I like nanopores and single-molecule detection.
Wageningen, The Netherlands
Pinned Repositories
20180320_TechTalk_TensorFlowIntro
Slides and additional material for an introductory talk on neural networks and building them using TensorFlow
assembler_benchmark_new_submissions
A mostly empty repository that collects submissions to a collective benchmarking effort as pull requests
basecallerBenchmark
Code for a MinION sequencer benchmark
basecallerTrainer
RNN interpretation of MinION raw signal using Tensorflow
baseLess
baseLess_16s_db
Database of neural networks for baseLess 16S-based detection
chop_n_drop_simulation
Simulation pipeline for a novel single-molecule protein fingerprinting method
FRETboard
Flexible semi-supervised classification for FRET traces
poreTally
Benchmark MinION assembler pipelines and publish your results in a heartbeat!
poreTally_example
example of a report generated by poreTally
cvdelannoy's Repositories
cvdelannoy/poreTally
Benchmark MinION assembler pipelines and publish your results in a heartbeat!
cvdelannoy/baseLess
cvdelannoy/FRETboard
Flexible semi-supervised classification for FRET traces
cvdelannoy/baseLess_16s_db
Database of neural networks for baseLess 16S-based detection
cvdelannoy/chop_n_drop_simulation
Simulation pipeline for a novel single-molecule protein fingerprinting method
cvdelannoy/poreTally_example
example of a report generated by poreTally
cvdelannoy/20180320_TechTalk_TensorFlowIntro
Slides and additional material for an introductory talk on neural networks and building them using TensorFlow
cvdelannoy/assembler_benchmark_new_submissions
A mostly empty repository that collects submissions to a collective benchmarking effort as pull requests
cvdelannoy/basecallerBenchmark
Code for a MinION sequencer benchmark
cvdelannoy/basecallerTrainer
RNN interpretation of MinION raw signal using Tensorflow
cvdelannoy/FRET_X_fingerprinting_simulation
cvdelannoy/bioconda-recipes
Conda recipes for the bioconda channel.
cvdelannoy/coa_classifier
cvdelannoy/DeepFRET-GUI
cvdelannoy/doc
Documentation of the Snakemake-Profiles project.
cvdelannoy/ebfret-gui
ebFRET (GUI version) – Empirical Bayes HMM analysis for multiple single-molecule FRET time series
cvdelannoy/IBP
cvdelannoy/image_format_tests
Just a test repository, to see whether images of different formats work in readme files
cvdelannoy/iMAX-FRET
cvdelannoy/local-sensitivity-hashing
Local sensitivity hashing
cvdelannoy/minimap2
A fast pairwise aligner for genomic and spliced nucleotide sequences
cvdelannoy/models
Models built with TensorFlow
cvdelannoy/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
cvdelannoy/NanoporeStateFinder
An R package for nanopore trace analysis, developed for the Maglia lab (Groningen University, The Netherlands)
cvdelannoy/poreTally_collective_submissions
A mostly empty repository that collects submissions to a collective benchmarking effort as pull requests
cvdelannoy/poreTallyCommunity
Summaries of submitted poreTally benchmark results will periodically be posted here!
cvdelannoy/rtd-tutorial