cytoscape/cytoscape-tutorials

Issues

• Add cool example for intro class

  #107 opened a year ago by AlexanderPico
  0

• Update to EnrichmentMap Pipeline Tutorial

  #82 opened 2 years ago by Cameron-IT
  1

• Add "last edited" date to all tutorials, on first slide

  #109 opened 7 months ago by khanspers
  1

• Create simple protocol based on STRING

  #66 opened 7 months ago by khanspers
  1

• New tutorial content: Visualizing data on MSigDB "pathway"

  #113 opened 7 months ago by khanspers
  0

• Update stringApp tutorial

  #110 opened 9 months ago by khanspers
  2

• Updates to Legend Creator tutorial

  #108 opened 10 months ago by khanspers
  1

• Better GUI tutorial support for WikiPathways data visualization

  #86 opened a year ago by khanspers
  22

• Update RNA-seq data analysis tutorial to use Get External Data in Excel instead of simply opening tsv

  #104 opened a year ago by khanspers
  3

• Add tenth advanced vis topic

  #106 opened a year ago by AlexanderPico
  0

• Add sif for folks to try tuning layouts

  #105 opened a year ago by AlexanderPico
  0

• Add slide defining common network terms regarding subnetworks

  #103 opened a year ago by AlexanderPico
  0

• Add slide for Filter and Search to intermediate data-vis deck

  #102 opened a year ago by AlexanderPico
  0

• New tutorial for WikiPathways phosphoproteomics data visualization

  #101 opened a year ago by khanspers
  1

• Scripted support for WikiPathways App data visualization workflow

  #100 opened 2 years ago by khanspers
  1

• Protocol and presentation for clustermaker

  #23 opened 2 years ago by AlexanderPico
  3

• Use EnrichmentMap app to visualise enriched pathways from selected UMAP clusters of a single cell RNAseq dataset

  #79 opened 2 years ago by jjacob12
  17

• network analysis of PICRUST2 pathway outputs (KEGG, etc)?

  #62 opened 2 years ago by marwa38
  4

• Cyscape can't open Cys file

  #74 opened 2 years ago by taoshengqiansui
  2

• Multiple node fill colour

  #80 opened 2 years ago by JohnJPaul
  2

• Create new reveal slide sets for Intro to Pathway Analysis (enrichment) workshop

  #76 opened 2 years ago by khanspers
  2

• Add id mapping to Loading Omics Data protocol

  #26 opened 2 years ago by AlexanderPico
  1

• Error importing files

  #70 opened 2 years ago by akettring
  2

• Formula for SLIST in new column

  #54 opened 2 years ago by ARW-UBT
  3

• New clustering app protocol

  #19 opened 7 years ago by AlexanderPico
  2

• Additional step for Diff Exp tutorial

  #50 opened 2 years ago by AlexanderPico
  2

• Protocol for STRING app

  #20 opened 2 years ago by AlexanderPico
  1

• updates to tutorials

  #27 opened 2 years ago by AlexanderPico
  2

• change version to bellow of Cytoscape icon

  #5 opened 2 years ago by jorgeboucas
  1

• 16s micrbiome network analysis

  #59 opened 3 years ago by marwa38
  4

• Trouble with the basic data visualization tutorial: Dataset seems incomplete

  #49 opened 4 years ago by scottedmands
  3

• Page not found for CyTargetLinker link

  #38 opened 5 years ago by kozo2
  1

• circRNA-miRNA-mRNA (and Proteins) interaction protocol

  #10 opened 7 years ago by AlexanderPico
  3

• New presentation module: NDEx

  #8 opened 7 years ago by florian-j-auer
  0

• New presentation module: Setting up and using Cytoscape/RStudio Docker

  #13 opened 7 years ago by florian-j-auer
  0

• New presentation and RMarkdown on using NDEx and Cytoscape in R

  #21 opened 7 years ago by florian-j-auer
  0

• Initial migration of Open Tutorials content

  #4 opened 7 years ago by AlexanderPico
  0

• Basic visualization tutorial questions

  #25 opened 7 years ago by jimhu-tamu
  2

• CyTargetLinker app protocols and presentation

  #6 opened 7 years ago by AlexanderPico
  1

• Protocol for Network Analyzer

  #24 opened 7 years ago by AlexanderPico
  0

• Add speaker notes to all modules

  #22 opened 7 years ago by AlexanderPico
  0

• Presentation on clustering and cluster analysis

  #18 opened 7 years ago by AlexanderPico
  0

• Export to RCX and Cytoscape as Protocol

  #16 opened 7 years ago by AlexanderPico
  0

• Presentation of multilayer graphs and application to Biology

  #17 opened 7 years ago by AlexanderPico
  0

• Topological analysis of social network in Python (Protocol and/or Automation noteboook)

  #15 opened 7 years ago by AlexanderPico
  0

• Metabolic network types (Presentation)

  #14 opened 7 years ago by AlexanderPico
  0

• Ageing (not growing old) protocol with Python

  #12 opened 7 years ago by AlexanderPico
  0

• Build-your-own pathway/network based on GO

  #11 opened 7 years ago by AlexanderPico
  0

• Protocol for genetic association data analysis and viz

  #9 opened 7 years ago by AlexanderPico
  0

• Presentation module of non-bio examples

  #7 opened 7 years ago by AlexanderPico
  0