dBenedek
Bioinformatics doctoral researcher at Helmholtz Munich in Germany.
Helmholtz Munich, Research Unit Radiation CytogeneticsMunich, Germany
dBenedek's Stars
carmonalab/GeneNMF
Methods to discover gene programs on single-cell data
genesofeve/projectR
huayc09/SeuratExtend
evanpeikon/functional_enrichment_analysis
A DIY guide to gene ontology, pathway, and gene set enrichment analysis
dpcook/emp_programs
Code used in the manuscript "Transcriptional census of epithelial-mesenchymal plasticity in cancer"
Genentech/gReLU
gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
umccr/TCGA-data-harmonization
Summary of TCGA datasets and steps for their harmonization.
rezacsedu/XAI-for-bioinformatics
Explainable AI for Bioinformatics
reimandlab/ActivePathways
Integrative pathway enrichment analysis of multivariate omics data
IOBR/IOBR
IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.
crazyhottommy/scRNAseq-analysis-notes
scRNAseq analysis notes from Ming Tang
LieberInstitute/slurmjobs
Helper functions for working with SLURM from R
charlie86/spotifyr
R wrapper for Spotify's Web API
ELTEbioinformatics/mulea
mulea - an R package for enrichment analysis using various ontologies and empirical FDR correction
immunitastx/coding_exercise_TCGA_infiltration
coding exercise using TCGA immune infiltration data
AuslanderNoam/virnatrap
neocaleb/NicheSVM
NicheSVM is a tool for analyzing PICs (Physically Interacting Cells) to detect niche-specific expression.
crazyhottommy/oneliner_100day_challenge
Bioinformatics one-liner for 100 days
noriakis/ggkegg
Analyzing and visualizing KEGG information using the grammar of graphics
sxf296/drug_targeting
franapoli/gep2pep
Gene Expression Profiles to Pathway Expression Profiles conversion and analysis
HuangLabUMN/oncoPredict
An R package for drug response prediction and drug-gene association prediction.
saezlab/flop
FunctionaL Omics Processing platform
SBU-BMI/wsinfer
🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
privefl/rmarkdown-website-template
Template for creating your website with R markdown.
smorabit/hdWGCNA
High dimensional weighted gene co-expression network analysis
ELELAB/MoonlightR
lcolladotor/jhustatcomputing
Course website for Johns Hopkins BSPH Statistical Computing (Biostatistics 140.776)
arvkevi/tgviz
1000 Genomes Project population visualizations using dimensionality reduction
brentp/peddy
genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF