Pinned Repositories
bagel-project
How to build a large dataset of enzyme variants to evaluate enzyme design algorithms
bglb_family
Quantitative prediction of mutant function across an enzyme family
cribbage
AI-powered cribbage for your command line
enzyme_design_constraint_converter
Scripts for converting Rosetta enzyme design constraint files into regular Rosetta constraint files
gato
Protein design using graph attention networks (GATs)
heme
Fast and friendly tools for protein design
protein-sedd
Based on: Lou+ [ICML 2024 Best Paper] Discrete Diffusion Modeling by Estimating the Ratios of the Data Distribution (https://arxiv.org/abs/2310.16834)
protein-transformers
Use generative ML to design new proteins using this simple, hackable implementation of protein transformer models
protein-transformers-from-scratch
Video lecture series on building generative ML models for protein sequences from scratch
dacarlin's Repositories
dacarlin/bagel-project
How to build a large dataset of enzyme variants to evaluate enzyme design algorithms
dacarlin/gato
Protein design using graph attention networks (GATs)
dacarlin/protein-transformers
Use generative ML to design new proteins using this simple, hackable implementation of protein transformer models
dacarlin/heme
Fast and friendly tools for protein design
dacarlin/protein-transformers-from-scratch
Video lecture series on building generative ML models for protein sequences from scratch
dacarlin/bigboogie.info
The code for "bigboogie.info", Alex's essays about guitar playing
dacarlin/cribbage
AI-powered cribbage for your command line
dacarlin/deep-learning-biology
Resources for deep learning in bioengineering with a focus on proteins
dacarlin/espresso
Use generative AI to create highly-expressed synthetic genes
dacarlin/protein-sedd
Based on: Lou+ [ICML 2024 Best Paper] Discrete Diffusion Modeling by Estimating the Ratios of the Data Distribution (https://arxiv.org/abs/2310.16834)
dacarlin/pymol-powerpack
A powerup for your PyMOL
dacarlin/albums
Local music player with great keyboard support
dacarlin/bagel-eval
A tough eval for protein design with generative ML
dacarlin/bagel-family-eval
dacarlin/biotite
A comprehensive library for computational molecular biology
dacarlin/carlin-cookbook
Carlin Family Cookbook
dacarlin/carlingardens.com
Website for Carlin Gardens
dacarlin/dacarlin
dacarlin/dotfiles
Configuration files for Vim, Bash, and PyMOL
dacarlin/graph-protein-design
Generative protein design with graph-structured transformers
dacarlin/inkisbetter.com
Alex's personal web site
dacarlin/molecule-language-models
Transformer models for generative modeling of bioactive chemical small molecules
dacarlin/neat_sequencing
Dense multiplexed PacBio sequencing for synthetic biology
dacarlin/protein-design-graph-attention-network
Protein design with graph attention networks (GATs)
dacarlin/protein-diffusion
dacarlin/protein-graph-neural-networks
Graph neural networks for biomolecules
dacarlin/rhodo
AI-powered protein design app for iPad
dacarlin/sonoma.systems
Marketing website for Sonoma Systems
dacarlin/trotsky
A Slack bot
dacarlin/veryneat