Pinned Repositories
bagel-project
How to build a large dataset of enzyme variants to evaluate enzyme design algorithms
bglb_family
Quantitative prediction of mutant function across an enzyme family
cribbage
AI-powered cribbage for your command line
enzyme_design_constraint_converter
Scripts for converting Rosetta enzyme design constraint files into regular Rosetta constraint files
gato
Protein design using graph attention networks (GATs)
heme
Fast and friendly tools for protein design
protein-sedd
Based on: Lou+ [ICML 2024 Best Paper] Discrete Diffusion Modeling by Estimating the Ratios of the Data Distribution (https://arxiv.org/abs/2310.16834)
protein-transformers
Use generative ML to design new proteins using this simple, hackable implementation of protein transformer models
protein-transformers-from-scratch
Video lecture series on building generative ML models for protein sequences from scratch
dacarlin's Repositories
dacarlin/chemcomm-tmo
Code and raw data for my paper "Biocatalytic conversion of ethylene…"
dacarlin/libationsabound
Libations Abound website
dacarlin/or_scaffolds
Data analysis of oxirane reductase scaffolds
dacarlin/oxirane-reductase
dacarlin/tom-homology-model
Homology models of TOM