Pinned Repositories
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
bamsurgeon
tools for adding mutations to existing .bam files, used for testing mutation callers
bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
bioio
Lightweight C++ library for reading FASTA and FASTQ files.
mappable
C++ library for genomic region based storage and querying
ranger
A Fast Implementation of Random Forests
samtag
Tag a BAM/CRAM file
starfish
Intersect multiple VCF files with haplotype awareness
tandem
A C++ tandem repeat finding library
octopus
Bayesian haplotype-based mutation calling
dancooke's Repositories
dancooke/starfish
Intersect multiple VCF files with haplotype awareness
dancooke/bioio
Lightweight C++ library for reading FASTA and FASTQ files.
dancooke/mappable
C++ library for genomic region based storage and querying
dancooke/tandem
A C++ tandem repeat finding library
dancooke/samtag
Tag a BAM/CRAM file
dancooke/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
dancooke/ranger
A Fast Implementation of Random Forests
dancooke/bamsurgeon
tools for adding mutations to existing .bam files, used for testing mutation callers
dancooke/bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
dancooke/bioconda-recipes
Conda recipes for the bioconda channel.
dancooke/hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
dancooke/htslib
C library for high-throughput sequencing data formats
dancooke/linuxbrew-core
🍻🐧 Core formulae for the Homebrew package manager on Linux
dancooke/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
dancooke/syntumorsizer
Snakemake workflow for making synthetic tumours
dancooke/UpSetR
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..