dancooke

dancooke's Stars

• RIAEvangelist/delete-github-issue-bookmarklet

  Use this bookmarklet to quickly delete an issue

  Language:HTML3

• DLTcollab/sse2neon

  A translator from Intel SSE intrinsics to Arm/Aarch64 NEON implementation

  Language:C++1.3k208

• nalepae/pandarallel

  A simple and efficient tool to parallelize Pandas operations on all available CPUs

  Language:Python3.7k212

• nextflow-io/nextflow

  A DSL for data-driven computational pipelines

  Language:Groovy2.7k628

• ProSolo/prosolo

  ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.

  Language:Rust221

• ProSolo/benchmarking_prosolo

  code and manuscript of "ProSolo: Accurate Variant Calling from Single Cell DNA Sequencing Data"

  Language:Python2

• citation-style-language/styles

  Official repository for Citation Style Language (CSL) citation styles.

  Language:Ruby3.3k3.8k

• snakemake/snakemake

  This is the development home of the workflow management system Snakemake. For general information, see

  Language:HTML2.3k552

• ImSoErgodic/py-upset

  A pure-python implementation of the UpSet suite of visualisation methods by Lex, Gehlenborg et al.

  Language:Python31457

• vectorclass/version2

  Vector class library, latest version

  Language:C++1.3k148

• human-pangenomics/HG002_Data_Freeze_v1.0

  Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)

  756

• seandavi/awesome-single-cell

  Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

  3.2k981

• Illumina/Polaris

  Data and information about the Polaris study

  528

• luntergroup/smcsmc

  Demographic inference from whole genomes

  Language:C++114

• lh3/CHM-eval

  Language:TeX528

• bwa-mem2/bwa-mem2

  The next version of bwa-mem

  Language:C++721100

• herumi/fmath

  fast log and exp functions for x86/x64 SSE

  Language:C++22237

• cbg-ethz/SCIPhI

  Language:C++2511

• tctianchi/pyvenn

  2 ~ 6 sets venn diagram for python

  Language:Python316119

• bcbio/bcbio_validations

  Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses

  Language:HTML3111

• mwaskom/seaborn

  Statistical data visualization in Python

  Language:Python12.5k1.9k

• vibansal/HapCUT2

  software tools for haplotype assembly from sequence data

  Language:C20636

• mcmanigle/OxThesis

  LaTeX template for an Oxford University thesis

  Language:TeX182105

• igvteam/igv

  Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

  Language:Java642384

• angeloskath/supervised-lda

  A flexible variational inference LDA library.

  Language:C++225

• imbs-hl/ranger

  A Fast Implementation of Random Forests

  Language:C++775193

• samtools/hts-specs

  Specifications of SAM/BAM and related high-throughput sequencing file formats

  Language:TeX651174

• scikit-learn/scikit-learn

  scikit-learn: machine learning in Python

  Language:Python59.9k25.4k

• mlpack/mlpack

  mlpack: a fast, header-only C++ machine learning library

  Language:C++5.1k1.6k

• keras-team/keras

  Deep Learning for humans

  Language:Python62k19.5k