dandi/dandi-cli

Issues

• DEVELOPMENT.md test instructions give many failing tests

  #1525 opened 11 days ago by asmacdo
  1

• Add configuration system

  #1521 opened 12 days ago by yarikoptic
  2

• Add "staggered"/gradual interruption for upload (and possibly download)

  #1523 opened 11 days ago by yarikoptic
  0

• Define/maintain centralized registry of instances

  #1522 opened 12 days ago by yarikoptic
  2

• Upload is inconsistent with NWB Zarr files

  #1520 opened 19 days ago by mavaylon1
  4

• Extend `DandiInstance` to support APIs outside of `dandiarchive.org` subdomains

  #1517 opened 25 days ago by aaronkanzer
  11

• Content Size (self.size) remaining at 0 for certain zarr-related assets

  #1518 opened 20 days ago by aaronkanzer
  0

• validate: Add -f|--format option to optionally serialize into json, json_pp, json_lines or yaml

  #1515 opened a month ago by yarikoptic
  0

• download might fail with tons of `ValueError: Not all part hashes submitted` from dandietag

  #1500 opened 2 months ago by yarikoptic
  2

• docker : started (?) to demand credentials for dandiarchive-api image?

  #1511 opened 2 months ago by yarikoptic
  1

• test_IteratorWithAggregation is flaky on Windows across pythons

  #1510 opened 2 months ago by yarikoptic
  0

• test_nwb2asset_remote_asset timed out in test (ubuntu-latest, 3.8, dandi-api)

  #1450 opened 6 months ago by yarikoptic
  7

• test_reextract_metadata some times times out on NFS

  #1507 opened 2 months ago by yarikoptic
  0

• ls --help does not format supported URI schemes correctly

  #1501 opened 2 months ago by yarikoptic
  0

• Python 3.8 tests failing

  #1503 opened 2 months ago by asmacdo
  2

• Convergence between DANDI Layout and BIDS

  #1498 opened 2 months ago by yarikoptic
  0

• "Incorrect password" when trying to download embargoed file

  #1455 opened 5 months ago by rcpeene
  11

• nwb - error: nwb_version not a proper semantic version

  #1485 opened 2 months ago by nrsc
  12

• failed to extract metadata: UnboundLocalError: local variable 'value' referenced before assignment

  #1481 opened 3 months ago by nrsc
  3

• Add an option to dump content of `Audit` table from Docker env upon completion of testing

  #1484 opened 3 months ago by yarikoptic
  8

• Test suite failure on HDMF 3.14.4

  #1494 opened 2 months ago by CodyCBakerPhD
  5

• Make logging work in case of multiple child processes (e.g. via currently used joblib.Parallel)

  #1495 opened 3 months ago by yarikoptic
  0

• 1 out of 296 paths are not unique. We will try adding _obj- based on crc32 of object_id

  #1489 opened 3 months ago by nrsc
  8

• request: dandiset.get_subjects() in the Python API

  #1457 opened 4 months ago by bendichter
  3

• upload: if any file/path is skipped due to not part of DANDI layout -- log WARNING upon completion or ask

  #1493 opened 3 months ago by yarikoptic
  0

• Sidecar JSON file is not recognized by `dandi upload` when the `dataset_description.json` file is missing

  #1464 opened 4 months ago by kabilar
  5

• Improve feedback when there's a validation error

  #1469 opened 4 months ago by kabilar
  1

• `dandi download` redownloads entire Dandiset when run within Dandiset directory

  #1468 opened 4 months ago by kabilar
  1

• Automatic File Naming Misses Some Sessions in 000971

  #1492 opened 5 months ago by pauladkisson
  2

• Remotely read/stream embargoed Zarr

  #1491 opened 3 months ago by kabilar
  7

• test_publish_and_manipulate and test_get_dandiset_published fail locally

  #1488 opened 3 months ago by yarikoptic
  2

• test_metadata.py::test_prepare_metadata started to fail

  #1483 opened 3 months ago by yarikoptic
  0

• Dandi organize not finding Dandiset

  #1479 opened 3 months ago by rcpeene
  1

• Partial Zarr Directory Updates in Dandi and LINC

  #1474 opened 4 months ago by aaronkanzer
  3

• download: add --keep-leading-path|-k or some mode for `--download`

  #1460 opened 4 months ago by yarikoptic
  13

• Error when using `--preserve-tree` option

  #1475 opened 4 months ago by kabilar
  7

• Support partial zarr download: asset path could point within zarr

  #1461 opened 4 months ago by yarikoptic
  1

• `FileExistsError` after restarting Zarr download

  #1473 opened 4 months ago by kabilar
  2

• Support partial zarr upload

  #1462 opened 4 months ago by yarikoptic
  1

• Schema mismatch between server and client

  #1463 opened 4 months ago by kabilar
  1

• Make zarr download begin as soon as initial page of zarr files is obtained

  #1447 opened 6 months ago by yarikoptic
  1

• Cannot upload file using ndx-multichannel-volume subject type

  #1456 opened 5 months ago by CodyCBakerPhD
  1

• RemoteDandiset.download_directory doesn't appear to work?

  #1452 opened 5 months ago by rcpeene
  2

• CI (smoke test example code in docs) started to fail on NFS (only)

  #1453 opened 5 months ago by yarikoptic
  2

• Make sure we pass fscacher types it expects

  #1451 opened 6 months ago by yarikoptic
  1

• Change validation of files (assets) to align with validation on the server

  #1448 opened 6 months ago by yarikoptic
  0

• Add some kind of --path-type [exact|glob] for delete

  #1446 opened 6 months ago by yarikoptic
  10

• dev-deps started to fail in organize: "The number of frame indices in 'starting_frame' ..."

  #1442 opened 6 months ago by yarikoptic
  2

• py 3.12 -- test completion sourcing fails

  #1441 opened 6 months ago by yarikoptic
  2

• simplify identifier on dandi download cli command

  #1435 opened 7 months ago by satra
  5