danieljsharpe

danieljsharpe's Stars

• ShangtongZhang/reinforcement-learning-an-introduction

  Python Implementation of Reinforcement Learning: An Introduction

  Language:Python13.7k555994.8k

• Zymrael/awesome-neural-ode

  A collection of resources regarding the interplay between differential equations, deep learning, dynamical systems, control and numerical methods.

  1.4k556153

• SciML/Catalyst.jl

  Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.

  Language:Julia4651738778

• markovmodel/PyEMMA

  🚂 Python API for Emma's Markov Model Algorithms 🚂

  Language:Python31231892120

• GDQuest/krita-free-brushes

  A collection of Free Krita brushes, by GDQuest, for concept artists, illustrators and game artists

  28224030

• matt-graham/mici

  Manifold Markov chain Monte Carlo methods in Python

  Language:Python22415527

• acerbilab/vbmc

  Variational Bayesian Monte Carlo (VBMC) algorithm for posterior and model inference in MATLAB

  Language:MATLAB22012341

• GuyAllard/markov_clustering

  markov clustering in python

  Language:Python17093038

• msmbuilder/msmbuilder

  :building_construction: Statistical models for biomolecular dynamics :building_construction:

  Language:Python1552551895

• qucontrol/krotov

  Python implementation of Krotov's method for quantum optimal control

  Language:Python7288229

• eigenfoo/littlemcmc

  A lightweight and performant implementation of HMC and NUTS in Python, spun out of the PyMC project.

  Language:Python5235510

• danieljsharpe/DISCOTRESS

  🦜 DISCOTRESS 🦜 is a software package to simulate and analyse the dynamics on arbitrary Markov chains

  Language:C++25505

• msmbuilder/msmbuilder-legacy

  Legacy release of MSMBuilder

  Language:Python251929328

• msmdev/pyGPCCA

  pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state models.

  Language:Python212204

• VlachosGroup/Multiscale-KMC

  Kinetic Monte Carlo with multiple time scales and sensitivity analysis

  Language:C++21818

• 526536686/Fast-Newman-Algorithm

  This algorithm's idea comes from <Fast algorithm for detecting community structure in networks>

  Language:Java20104

• CRHENS/Spatio-Temporal-

  Matlab codes used in the paper "Predicting the patterns of spatio-temporal signal propagation in complex networks"

  Language:MATLAB180014

• agalea91/intro_to_QMC

  Introductory QMC teaching material for Python

  Language:Jupyter Notebook14308

• jieqian2/Numerical-Methods-in-Finance

  This file includes the code I've written for the course Numerical Method in finance, Stochastic Calculus in Spring 2020.

  Language:Jupyter Notebook9105

• markovmodel/pytram

  The pytram package is deprecated and no longer supported. We recommend to switch to PyEMMA

  Language:Python920462

• markovmodel/graphtime

  Encoding of transition probabilities with undirected graphical models

  Language:Jupyter Notebook8515

• koadman/proxigenomics

  Hi-C analysis of heterogeneous samples

  Language:C53492

• tomswinburne/PyGT

  Graph transformation for metastable Markov chains

  Language:Python5454

• tjanson/rea

  Jiménez–Marzal Recursive Enumeration Algorithm for computing the k shortest paths in Python

  Language:Python3302

• vahidnourbakhsh/Simulation

  Queue Simulation

  Language:Java2200

• dspray95/ecological-dynamics

  Python Solutions for Ecological Dynamics by W.S.C Gurney and R.M Nisbet

  Language:Python10

• Read-Lab-UCI/Rare-Event-Sampling-Gene-Networks

  Public repo for code relevant to "Rare-event sampling of epigenetic landscapes and phenotype transitions"

  Language:MATLAB1300