davek44

davek44's Stars

• mwaskom/seaborn

  Statistical data visualization in Python

  Language:Python12.6k2642.6k1.9k

• statsmodels/statsmodels

  Statsmodels: statistical modeling and econometrics in Python

  Language:Python10.2k2835.5k2.9k

• blei-lab/edward

  A probabilistic programming language in TensorFlow. Deep generative models, variational inference.

  Language:Jupyter Notebook4.8k271514759

• scverse/scanpy

  Single-cell analysis in Python. Scales to >1M cells.

  Language:Python1.9k511.8k602

• deeptools/pyGenomeTracks

  python module to plot beautiful and highly customizable genome browser tracks

  Language:Python77231209111

• deeptools/deepTools

  Tools to process and analyze deep sequencing data.

  Language:Python68337942211

• zqfang/GSEApy

  Gene Set Enrichment Analysis in Python

  Language:Python56511201118

• linnarsson-lab/loompy

  Python implementation of the Loom file format - http://loompy.org

  Language:Python140816637

• calico/scBasset

  Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.

  Language:Jupyter Notebook9662313

• calico/scnym

  Semi-supervised adversarial neural networks for classification of single cell transcriptomics data

  Language:Python7361611

• davek44/Glimmer-MG

  Gene prediction in metagenomic sequences using Glimmer augmented by phylogenetic classification and clustering

  Language:C++15334

• davek44/Quake

  Language:C++6223

• PSI-Lab/COSSMO

  Competitive Splice Site Model

  Language:Python6301

• davek44/Scimm

  Sequence clustering with interpolated Markov models

  Language:C3201