dbmi-pitt/dbmi-annotator

Issues

• Error while trying to run docker-compose up

  #232 opened 5 years ago by evgakis
  0

• [RDF Translation] should obo:RO_0000051 be obo:BFO_0000051?

  #231 opened 7 years ago by rkboyce
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• Need to correct the youtube video link provided in the description page

  #230 opened 7 years ago by rkboyce
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• [case report] total DIPS score incorrect calculated

  #228 opened 7 years ago by ningyifan
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• [PDF] quote in form editor run words together

  #227 opened 7 years ago by ningyifan
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• [PDF] data extraction test

  #229 opened 7 years ago by ningyifan
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• [software testing] Selenium automate testing

  #193 opened 7 years ago by ningyifan
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• [rdf/owl data] Finalize the Case Report instance RDF/OWL export

  #225 opened 7 years ago by rkboyce
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• [rdf/owl data] Finalize the clinical trial instance RDF/OWL export

  #224 opened 7 years ago by rkboyce
  1

• [rdf/owl data] Finalize the experiment instance RDF/OWL export

  #226 opened 7 years ago by rkboyce
  0

• [UI] checkbox and radio button now shown when upgrade from Ubuntu 14.04 to 16.04

  #223 opened 7 years ago by ningyifan
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• "Create claim" renders the page unresponsive on article PMC2686069

  #222 opened 7 years ago by eric-chou
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• [ETL] warning and error message - elastic to postgres translation

  #221 opened 7 years ago by ningyifan
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• Fix metabolite dosing - should apply to parent compound

  #219 opened 7 years ago by ningyifan
  0

• Making comparisons to other annotation tool

  #220 opened 7 years ago by rkboyce
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• Do we need sentence combine feature enable on html documents?

  #216 opened 7 years ago by ningyifan
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• Three more videos needed

  #200 opened 8 years ago by rkboyce
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• [web monitering] install w3m as text based browser and tool for monitoring website

  #196 opened 8 years ago by ningyifan
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• Modify the phenotype data/material dosage wizard to handle normalized dosing

  #198 opened 8 years ago by rkboyce
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• documenting the encoding used

  #203 opened 8 years ago by jodischneider
  1

• [form validation] when drug2 is N/A, marking as precipitant will causes N/A appears in assertion

  #218 opened 7 years ago by ningyifan
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• Proposed new feature for reselect text quote when editing claim/data

  #217 opened 7 years ago by ningyifan
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• [browser compatibility] Not able to create/edit annotation on IE

  #194 opened 8 years ago by ningyifan
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• Add some method for taking notes as data/materials is entered

  #199 opened 8 years ago by rkboyce
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• New annotation plug in for experiments related to inhibition or subtrate relationships

  #201 opened 7 years ago by rkboyce
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• [RDF exportation] generate RDF graph for annotation as instances with dideo ontology

  #192 opened 7 years ago by ningyifan
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• Experiment plug-in todos

  #213 opened 7 years ago by rkboyce
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• Make it possible to note evidence use assumptions when creating a claim

  #214 opened 7 years ago by rkboyce
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• [RDF dataset] apply dideo ontology to RDF dump

  #190 opened 7 years ago by ningyifan
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• Rejected case report but DIPS data not showing in red

  #212 opened 7 years ago by rkboyce
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• add flavin-containing monooxygenase (FMO) enzymes to cell system drop down?

  #211 opened 7 years ago by rkboyce
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• Video demo link doesn't point to the correct link

  #210 opened 7 years ago by trivedigaurav
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• [mockup] Evidence Type

  #185 opened 8 years ago by wenzhang61
  1

• Why "refutes" and not "challenges" for the Ev relationship?

  #206 opened 8 years ago by jodischneider
  2

• Drop-down showing current claim selection is not correct for substrate-of assertion types

  #208 opened 8 years ago by rkboyce
  0

• Need to be able to type in drugs/enantiomers/metabolites when they are not highlightable

  #207 opened 8 years ago by rkboyce
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• Please add intramuscular to the formulation drop down for drug dosage

  #209 opened 8 years ago by rkboyce
  1

• [mockup]form design for case report

  #189 opened 8 years ago by wenzhang61
  0

• Add SLC01B1 to Gene Family dropdown

  #197 opened 8 years ago by rkboyce
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• Export file format (not currently CSV)

  #204 opened 8 years ago by jodischneider
  1

• Web Annotation Data Model

  #205 opened 8 years ago by jodischneider
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• [New method] add phenotype to method list on claim form

  #184 opened 8 years ago by ningyifan
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• Review pdf2xml, crossref and CCC RightsLink approaches to providing full text for text mining

  #202 opened 8 years ago by rkboyce
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• Need to be able to highlight entities anywhere in a document (except the tables for now)

  #191 opened 8 years ago by rkboyce
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• [annotation table] switch claim then jump to the position of statement

  #195 opened 8 years ago by ningyifan
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• [docker] pre-load SPLs annotation within docker container

  #188 opened 8 years ago by ningyifan
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• [docker] keep postgres and elasticsearch data volume persistence

  #187 opened 8 years ago by ningyifan
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• Metabolites were selected but not showing up in claim dropdown

  #186 opened 8 years ago by amygrizzle
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• [HTML] form validation: no warning box when user doesn't input valid data

  #183 opened 8 years ago by wenzhang61
  0

• [HTML] ERROR cannot edit input box in data editor

  #182 opened 8 years ago by wenzhang61
  1