dejunlin/hicrep

Issues

• FutureWarning: treating keys as positions in deprecated in pandas

  #23 opened 8 months ago by bskubi
  1

• hicrepcm to generate clustermap of hicrep SCC scores

  #22 opened a year ago
  1

• whether could output a data1_vs_data2.cool for downstream analysis?

  #21 opened a year ago by JiaoLaboratory
  2

• AssertionError: Contact matrix 2 of chromosome Y is empty

  #20 opened a year ago by redjay8
  2

• Compare similarity using ICE-normalized cool files

  #19 opened a year ago by zzhoujialu
  1

• `AssertionError` when running hicrep

  #18 opened 2 years ago by PanZiwei
  1

• AssertionError: Input cool files have different number of bins

  #17 opened 3 years ago by hiroyukikato911
  2

• "chrM" not being excluded

  #15 opened 3 years ago by kevbrick
  3

• The chromosome order in output.SCC.txt

  #14 opened 4 years ago by KunFang93
  3

• Should the input matrix be normalized for hicrep?

  #13 opened 4 years ago by YiweiNiu
  3

• KeyError: "Unable to open object (object 'chroms' doesn't exist)"

  #12 opened 4 years ago by YiweiNiu
  2

• [Request] Functionality use hicrep with .hic files

  #10 opened 4 years ago by srcoulombe
  1

• KeyError: 'sum'

  #9 opened 4 years ago by mdozmorov
  7

• Existing python implementation

  #4 opened 4 years ago by cmdoret
  2

• About Interpretation of results

  #5 opened 4 years ago by qianXX
  2