delt0r/msms

Issues

• How build msms from sources?

  #55 opened 2 years ago
  2

• -Sc argument not working as expected

  #54 opened 2 years ago
  0

• Rounding issue with msms segregating site positions

  #52 opened 5 years ago
  2

• Second example from quickstart page fails

  #51 opened 5 years ago
  1

• how to add instantaneous max lineages event?

  #49 opened 7 years ago
  0

• -Smu, -ooC, frequency of introduction

  #48 opened 7 years ago
  0

• The link is broken

  #47 opened 8 years ago
  1

• -g flag does not work when set before -n flag, problem with example in manual

  #46 opened 9 years ago
  0

• Clarification on local LD and haplotype structure when using the -SI flag

  #45 opened 9 years ago
  0

• Is there any way to increase the precision of position floats?

  #44 opened 9 years ago
  0

• Problem with frequency trajectory when simulating with large adaptive theta and small selection coefficint

  #43 opened 9 years ago
  0

• Problems reading in frequency trace

  #42 opened 9 years ago
  0

• Unexpected behavior with -es and selection

  #41 opened 10 years ago
  2

• Using -SI at time 0 produces NullPointerException

  #40 opened 10 years ago
  2

• Multiple gene trees outputted

  #39 opened 10 years ago
  0

• Origin Count dependent on time when selection starts

  #38 opened 10 years ago
  1

• Strange output when using -Smark and -SI together

  #37 opened 10 years ago
  1

• Questions on -SI, -Sc with -oOC

  #36 opened 10 years ago
  0

• Example from manual fails

  #35 opened 10 years ago
  1

• Unexpected non-binary allelic state at selected locus

  #34 opened 10 years ago
  2

• -Strace option gives exception

  #33 opened 11 years ago
  1

• Difficulty with msms result when using reduced subpopulation size

  #32 opened 10 years ago
  3

• Time sampled data 2

  #31 opened 11 years ago
  0

• Beneficial allele gets lost although -SFC is set

  #30 opened 10 years ago
  1

• Problems simulating selection in different demes and at different times using an admixture model

  #29 opened 10 years ago
  1

• Statistics and Selection

  #28 opened 10 years ago
  0

• Variants arise at same position as selected site... -Smark issue?

  #27 opened 10 years ago
  1

• -ej events disturb starting frequency set by -SI ... -Smark issue?

  #26 opened 10 years ago
  1

• Smark clarification

  #25 opened 10 years ago
  1

• Processing of trace file with -Strace option

  #24 opened 10 years ago
  0

• Smark occasionally wrong

  #23 opened 11 years ago
  3

• Time sampled data

  #22 opened 12 years ago
  2

• -oOC outputs numbers larger than the sample size

  #21 opened 12 years ago
  1

• Exception when using -Strace

  #20 opened 12 years ago
  2

• Compatibility with ms output

  #19 opened 12 years ago
  1

• Branch length precision

  #18 opened 12 years ago
  3

• build 92 and java 6

  #17 opened 12 years ago
  5

• multiple alleles at non-selected site

  #16 opened 12 years ago
  4

• Choose island on which beneficial mutation arises using the -SF option

  #15 opened 12 years ago
  0

• Issues with complex demography and old selection events

  #14 opened 12 years ago
  4

• -Strace exceptions

  #13 opened 12 years ago
  2

• Problem simulating selection with the -es and -ej options used in constructing the demography

  #12 opened 12 years ago
  2

• java.lang.ArrayIndexOutOfBoundsException when use -Sc

  #11 opened 12 years ago
  3

• Something wrong for -Sc

  #10 opened 12 years ago
  0

• out of memory using -oTrace option

  #9 opened 12 years ago
  1

• Problems with selection before a population split (forward in time)

  #8 opened 12 years ago
  3

• Trying to output allele frequency trajectory in a multi-deme model

  #6 opened 12 years ago
  2

• Forward simulation frequency trace seems to be wrong in models where -ej is used

  #5 opened 12 years ago
  5

• Sometring is wrong with the -Strace option

  #4 opened 12 years ago
  3

• Hangs with -SFC

  #3 opened 12 years ago
  2