direnardak

direnardak's Stars

• seandavi/awesome-single-cell

  Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

  3k25023935

• scverse/scanpy

  Single-cell analysis in Python. Scales to >1M cells.

  Language:Python1.8k521.7k583

• pachterlab/gget

  🧬 gget enables efficient querying of genomic reference databases

  Language:Python884116269

• macs3-project/MACS

  MACS -- Model-based Analysis of ChIP-Seq

  Language:Cython69149520270

• mikelove/awesome-multi-omics

  List of software packages for multi-omics analysis

  685536158

• vanheeringen-lab/genomepy

  genes and genomes at your fingertips

  Language:Python366612036

• morris-lab/CellOracle

  This is the alpha version of the CellOracle package

  Language:Python290719549

• zpliulab/GENELink

  Language:Python23136

• karthikj89/humanpdac

  single cell analysis of treatment naive and treated human PDAC

  Language:Jupyter Notebook189

• KoesGroup/Snakemake_ChIPseq_PE

  Pipeline for the analysis of PE ChIP-seq data

  Language:Python143194

• mgildea87/ChIPseq

  Paired-end ChIPseq data processing workflow designed for execution on the BigPurple HPC. Primary software used: FastQC, Fastp, Bowtie 2, MACS2, MultiQC

  Language:Python2200

• winston-lab/chip-seq

  ChIP-seq analysis pipeline

  Language:R10