djberenberg

djberenberg's Stars

• celery/celery

  Distributed Task Queue (development branch)

  Language:Python24.6k4705.1k4.7k

• pyg-team/pytorch_geometric

  Graph Neural Network Library for PyTorch

  Language:Python21.1k2523.5k3.6k

• ml-tooling/best-of-ml-python

  🏆 A ranked list of awesome machine learning Python libraries. Updated weekly.

  16.3k406552.4k

• networkx/networkx

  Network Analysis in Python

  Language:Python14.8k2793.2k3.2k

• mamba-org/mamba

  The Fast Cross-Platform Package Manager

  Language:C++6.8k471.7k348

• more-itertools/more-itertools

  More routines for operating on iterables, beyond itertools

  Language:Python3.7k42341285

• aqlaboratory/openfold

  Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

  Language:Python2.7k46347519

• chaoyanghe/Awesome-Federated-Learning

  FedML - The Research and Production Integrated Federated Learning Library: https://fedml.ai

  1.9k904333

• gotcha/ipdb

  Integration of IPython pdb

  Language:Python1.9k28198146

• rentruewang/koila

  Prevent PyTorch's `CUDA error: out of memory` in just 1 line of code.

  Language:Python1.8k112863

• innovation-cat/Awesome-Federated-Machine-Learning

  Everything about federated learning, including research papers, books, codes, tutorials, videos and beyond

  1.7k400265

• jnurmine/Zenburn

  Zenburn is a low-contrast color scheme for Vim.

  Language:Vim script8932721150

• BioPandas/biopandas

  Working with molecular structures in pandas DataFrames

  Language:Python7091759121

• mathiasuy/Soluciones-Klenberg

  Algorithm Design (Kleinberg Tardos 2005) - Solutions

  651112153

• biotite-dev/biotite

  A comprehensive library for computational molecular biology

  Language:Python64616175101

• EdisonLeeeee/Graph-Adversarial-Learning

  A curated collection of adversarial attack and defense on graph data.

  Language:Python54824379

• zfjsail/gae-pytorch

  Graph Auto-Encoder in PyTorch

  Language:Python4095977

• huweibo/Awesome-Federated-Learning-on-Graph-and-GNN-papers

  Federated learning on graph, especially on graph neural networks (GNNs), knowledge graph, and private GNN.

  31616148

• flatironinstitute/DeepFRI

  Deep functional residue identification

  Language:Python300104375

• Lin-Yijie/Graph-Matching-Networks

  PyTorch implementation of Graph Matching Networks, e.g., Graph Matching with Bi-level Noisy Correspondence (COMMON, ICCV 2023), Graph Matching Networks for Learning the Similarity of Graph Structured Objects (GMN, ICML 2019).

  Language:Python28231155

• zhonge/cryodrgn

  Neural networks for cryo-EM reconstruction

  Language:Python2341819667

• modernatx/seqlike

  Unified biological sequence manipulation in Python

  Language:Python20683521

• lucidrains/ddpm-proteins

  A denoising diffusion probabilistic model (DDPM) tailored for conditional generation of protein distograms

  Language:Python1334019

• csi-greifflab/Absolut

  Unconstrained lattice antibody-antigen bindings generator

  Language:Jupyter Notebook9762218

• nyu-dl/dl4chem-mgm

  Language:Python684910

• tymor22/tm-vec

  Language:Jupyter Notebook623258

• carlos-jenkins/autoapi

  Automatic Python API reference documentation generator for Sphinx, inspired by Doxygen.

  Language:Python20399

• bzz/practical-pytorch-lightning

  char-level RNN example using PyTorch and PyTorch Lightning

  Language:Python8501

• charliec443/graph-differential-pooling

  Based on diffpool paper - notes on torch implementation

  Language:Python61

• stephenra/stephenra.github.io

  Personal website

  10