dkoslicki

Pinned Repositories

• ARK

  Aggregation of kmers: preprocessing step for kmer-based metagenomics taxonomic profiling techniques

  Language:Julia4300

• CAMIKraken

  A Dockerfile and wrappers for the Kraken metagenomic classifier

  Language:Python3212

• CMash

  Fast and accurate set similarity estimation via containment min hash

  Language:Python429319

• EMDeBruijn

  Earth mover's distance between de Bruijn graphs

  Language:C++7200

• EMDUnifrac

  Computation of Unifrac using Earth Movers Distance

  Language:Python6725

• MetaPalette

  Metagenomic profiling and phylogenetic distances via common kmers

  Language:Python427155

• MinHashMetagenomics

  Fast approximation of similarity for sets of very different sizes

  Language:Python20711

• NCATS

  Language:Python2101320

• PressPurt

  The core algorithm for the Koslicki & Novak JMB paper (2018)

  Language:Python24320

• Quikr

  Quikr: a method for rapid reconstruction of bacterial communities via compressive sensing.

  Language:Julia3401

dkoslicki's Repositories