dkoslicki's Stars
NCATSTranslator/TranslatorTechnicalDocumentation
Official Developer Documentation repository for the Biomedical Data Translator
NCATSTranslator/Tests
sourmash-bio/sourmash_plugin_branchwater
fast, multithreaded sourmash operations: search, compare, and gather.
RTXteam/xDTD_training_pipeline
This repo is created for hosting a pipeline for automatically training xDTD model.
pydata/sparse
Sparse multi-dimensional arrays for the PyData ecosystem
pirovc/genome_updater
Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy
tatonetti-lab/onsides
A resource of adverse drug effects extracted from FDA structured product labels
RTXteam/RTX
Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)
DeepSkyDad/AF3
NCATSTranslator/workflow-runner
medvedevgroup/mutation-rate-intervals
Support for "statistics of k-mers from a sequence undergoing a simple mutation process without spurious matches"
NCATSTranslator/TranslatorArchitecture
kblin/ncbi-genome-download
Scripts to download genomes from the NCBI FTP servers
dkoslicki/PressPurt
The core algorithm for the Koslicki & Novak JMB paper (2018)
refresh-bio/kmer-db
Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).
CAMI-challenge/OPAL
OPAL: Open-community Profiling Assessment tooL
anantshri/github_cloner
Clone github repositories of a user / organization
rrwick/Bandage
a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
ncats/translator-workflows
fizyr/keras-retinanet
Keras implementation of RetinaNet object detection.
s-yata/marisa-trie
MARISA: Matching Algorithm with Recursively Implemented StorAge
pytries/datrie
Fast, efficiently stored Trie for Python. Uses libdatrie.
NCATS-Tangerine/translator-api-registry
This repo hosts the API metadata for the Translator project
dkoslicki/MetaPalette
Metagenomic profiling and phylogenetic distances via common kmers
gmarcais/Jellyfish
A fast multi-threaded k-mer counter