difficulty setting a default docker image
Closed this issue · 1 comments
23andme-jaredo commented
Hi there,
I am having trouble getting a global docker image working via my extras.json:
{
"defaultRuntimeAttributes" : {
"docker" : "dx://ukbb_wgs_test1:/docker_images/wgs_phaser.tar.gz"
}
}
I then compile with:
java -jar ~/software/dxCompiler-2.10.4.jar compile phase_wgs_noruntime.wdl -project ukbb_wgs_test1 -folder /workflows/test/ -f -extras extras.json
but get various runtime errors since it is not using the docker image.
If I add:
runtime {
docker: "dx://ukbb_wgs_test1:/docker_images/wgs_phaser.tar.gz"
}
to each task then it works fine so the docker path is correct etc.
23andme-jaredo commented
looks like:
{
"default_runtime_attributes": {
"docker" : "dx://ukbb_wgs_test1:/docker_images/wgs_phaser.tar.gz"
}
}
works. I think the documentation here might need to be updated.