dongdongdong7

dongdongdong7's Stars

• tensorflow/hub

  A library for transfer learning by reusing parts of TensorFlow models.

  Language:Python3.5k1547051.7k

• epam/ketcher

  Web-based molecule sketcher

  Language:TypeScript485363.2k165

• reymond-group/smilesDrawer

  A small, highly performant JavaScript component for parsing and drawing SMILES strings. Released under the MIT license.

  Language:JavaScript4431214471

• samgoldman97/ms-pred

  Predicting tandem mass spectra from molecules

  Language:Jupyter Notebook698816

• WGLab/Bioformer

  Bioformer: an efficient BERT model for biomedical text mining

  53906

• griquelme/tidyms

  TidyMS: Tools for working with MS data in untargeted metabolomics

  Language:Python511611

• Asa12138/ReporterScore

  Generalized Reporter Score-based Functional Enrichment Method for Omics Data

  Language:R49293

• dgrapov/MetaMapR

  Network mapping tool for metabolomics + data.

  Language:HTML4816745

• samgoldman97/mist

  Encoding MS/MS spectra using formula transformers for inferring molecular properties

  Language:Jupyter Notebook487514

• CSi-Studio/3D-MSNet

  A point cloud based deep learning model for untargeted feature detection and quantification in profile LC-HRMS data

  Language:Python28132

• RogerGinBer/RHermes

  RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.

  Language:R25357

• YuanyueLi/MSEntropy

  Spectral entropy for mass spectrometry data.

  Language:Python24206

• KujawinskiLaboratory/Autotuner

  This repo contains the code needed to run the R package Autotuner. Autotuner is used to identify proper parameters during metabolomics data processing.

  Language:R166348

• zhengfj1994/MetEx

  MetEx is a tool to extract and annotate metabolites from liquid chromatography–mass spectrometry data.

  Language:R16223

• YuanyueLi/FlashEntropySearch

  Flash entropy search

  Language:Jupyter Notebook14131

• ZhuMetLab/MetDNA2

  Knowledge-guided multilayer network approach is executed in MetDNA2

  Language:R13225

• gggraca/MetaboAnnotatoR

  Package to perform annotations of features from LC-MS All-ion fragmentation (AIF) metabolomics datasets

  Language:R12435

• HuanLab/ISFrag

  A bioinformatic tool facilitating automated in-source fragmentation identification

  Language:R10332

• ZhuMSLab/DecoMetDIA

  Language:R10254

• ressomlab/MetFID

  CNN-Based Compound Fingerprint Prediction for Metabolite Annotation

  Language:Python9211

• LargeMetabo/LargeMetabo

  LargeMetabo: an R package for data integration, biomarker identification, metabolite annotation and enrichment analysis in large-scale metabolomics

  Language:R8111

• plyush1993/OUKS

  🔴OUKS🔵 Omics Untargeted Key Script

  Language:R8212

• mjhelf/MassTools

  R package for mass and molecular formula calculations

  Language:R7014

• HuanLab/HDPairFinder

  HDPairFinder recognizes hydrogen and deuterium labeled compounds in LC-MS analysis.

  Language:R5101

• krispir/cpc

  The purpose of the cpc package is primarily to characterize the peaks detected using a separate peak detection method. Currently the only supported preprocessing software is XCMS.

  Language:C++5253

• HuanLab/Paramounter

  Language:R4112

• KelseyChetnik/MetaClean

  Automated Detection of Low-Quality Integrations in Untargeted Metabolomics Data

  Language:R40

• cran/PEtests

  :exclamation: This is a read-only mirror of the CRAN R package repository. PEtests — Power-Enhanced (PE) Tests for High-Dimensional Data

  Language:R3

• fMalinka/metaboCombineR

  A tool for aligning LC-MS experiments

  Language:C++320

• janlisec/InterpretMSSpectrum

  An R package to interpret mass spectra from different ionizations (ESI, APCI).

  Language:R210