earmingol
Chilean - PhD in Bioinformatics & Systems Biology from UC San Diego - Postdoc at the Wellcome Sanger Institute
Wellcome Sanger Institute
Pinned Repositories
awesome-machine-learning
A curated list of awesome Machine Learning frameworks, libraries and software.
cell2cell
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
earmingol.github.io
Microbiome-Factorization
Examples of using PhyloFactor and DEICODE to analyze microbiome datasets.
Personal-Collection
Learning how to implement different algorithms
SARS-Human-DERank
PageRank-based search of important human genes for viral infection
scCellFie
scCellFie, inspired by the MATLAB-based CellFie tool, offers advanced analysis of metabolic functions on Python using single-cell and spatial transcriptomics. Efficient and user-friendly, it integrates with Scanpy to extend CellFie's capabilities, enabling in-depth single-cell and spatial metabolic task analysis.
singlecell-ccc
Docker image for running cell-cell communication analyses
Ligand-Receptor-Pairs
Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.
ccc_protocols
LIANA x Tensor-cell2cell Protocols
earmingol's Repositories
earmingol/cell2cell
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
earmingol/earmingol.github.io
earmingol/SARS-Human-DERank
PageRank-based search of important human genes for viral infection
earmingol/scCellFie
scCellFie, inspired by the MATLAB-based CellFie tool, offers advanced analysis of metabolic functions on Python using single-cell and spatial transcriptomics. Efficient and user-friendly, it integrates with Scanpy to extend CellFie's capabilities, enabling in-depth single-cell and spatial metabolic task analysis.
earmingol/singlecell-ccc
Docker image for running cell-cell communication analyses
earmingol/awesome-machine-learning
A curated list of awesome Machine Learning frameworks, libraries and software.
earmingol/cobra_utils
Utility to simplify obtaining information from genome-scale models as well as their manipulation. This implementation is available only for working with COBRApy.
earmingol/Guitar
Codes for helping to learn playing guitar
earmingol/Microbiome-Factorization
Examples of using PhyloFactor and DEICODE to analyze microbiome datasets.
earmingol/OmicsAnalysis
Analysis of Omics datasets
earmingol/Personal-Collection
Learning how to implement different algorithms
earmingol/Awesome-GANs
Awesome Generative Adversarial Networks with tensorflow
earmingol/Bash-Oneliner
A collection of handy Bash One-Liners and terminal tricks for data processing and Linux system maintenance.
earmingol/blog
Contain all the stuff in my blog
earmingol/Circos
earmingol/cobrapy
COBRApy is a package for constraint-based modeling of metabolic networks.
earmingol/Colab
Repository to store notebooks in Google Colab
earmingol/covid_balf
R script for the covid balf data analysis
earmingol/Datos-COVID19
En formato estándar
earmingol/handson-ml
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.
earmingol/Linear_Algebra_With_Python
Lecture Notes for Linear Algebra Featuring Python
earmingol/MammalianSecretoryRecon
Secretory Pathway Reconstruction for Human, CHO, and Mouse
earmingol/Network_Evaluation_Tools
Python 2.7 package with examples for evaluating a network's ability to group a given node set in network proximity.
earmingol/nxviz
Visualization Package for NetworkX
earmingol/Pyevolve
Pyevolve
earmingol/qp-shogun
earmingol/scRNAseq-analysis-notes
scRNAseq analysis notes from Ming Tang
earmingol/single-cell-review
earmingol/single_cell__transcritpomics_roadmap