ebanigan

doubling_force

Code to automatically compute doubling force of from a particular kind of microscopy data

kMTs

Stochastic simulation of kinetochore microtubules

shell-polymer

microcompartments

Polymer simulations of compartments and extrusion modeling the mitosis-to-G1 transition

moving-barriers-paper

Simulation and analysis codes used in Banigan*, Tang*, van den Berg* et al. Transcription shapes 3D chromatin organization by interacting with loop-extruding cohesin complexes, bioRxiv (2021)

one_sided_extrusion

Codes relevant for "Chromosome organization by one-sided and two-sided loop extrusion"

ebanigan/doubling_force

Code to automatically compute doubling force of from a particular kind of microscopy data

ebanigan/kMTs

Stochastic simulation of kinetochore microtubules

ebanigan/shell-polymer