ebanigan

ebanigan's Stars

• donnemartin/system-design-primer

  Learn how to design large-scale systems. Prep for the system design interview. Includes Anki flashcards.

  Language:Python283k6.6k31447.3k

• CSSEGISandData/COVID-19

  Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

  29.1k8653.8k18.4k

• iamtrask/Grokking-Deep-Learning

  this repository accompanies the book "Grokking Deep Learning"

  Language:Jupyter Notebook7.5k319511.6k

• boostorg/boost

  Super-project for modularized Boost

  Language:HTML7.3k3043171.8k

• openmm/openmm

  OpenMM is a toolkit for molecular simulation using high performance GPU code.

  Language:C++1.5k822.8k531

• ryansmcgee/seirsplus

  Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.

  Language:Python6603437218

• essandess/isp-data-pollution

  ISP Data Pollution to Protect Private Browsing History with Obfuscation

  Language:Python594402951

• open2c/cooler

  A cool place to store your Hi-C

  Language:Python2091429851

• open2c/bioframe

  Genomic interval operations on Pandas DataFrames

  Language:Python1761210930

• facebookresearch/PoincareMaps

  The need to understand cell developmental processes has spawned a plethora of computational methods for discovering hierarchies from scRNAseq data. However, existing techniques are based on Euclidean geometry which is not an optimal choice for modeling complex cell trajectories with multiple branches. To overcome this fundamental representation issue we propose Poincaré maps, a method harnessing the power of hyperbolic geometry into the realm of single-cell data analysis.

  Language:HTML14714631

• open2c/cooltools

  The tools for your .cool's

  Language:Jupyter Notebook1431331051

• 4dn-dcic/hic2cool

  Lightweight converter between hic and cool contact matrices.

  Language:Python6710417

• higlass/higlass-python

  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer

  Language:Python5465912

• open2c/polychrom

  Chromosome polymer simulations and in silico capture experiments

  Language:Python4792116

• open2c/quaich

  snakemake pipeline for Hi-C post-processing

  Language:Python224126

• open2c/looplib

  A library to analyse the structure of 1d loops and simulate loop extrusion by loop extruding factors.

  Language:Cython10646

• mirnylab/one_sided_extrusion

  Codes relevant for "Chromosome organization by one-sided and two-sided loop extrusion"

  Language:Jupyter Notebook6602

• SGrosse-Holz/rouselib

  Small library to sample & evolve Rouse conformations

  Language:Python2100