edawson/gfakluge

Issues

• fatal error: gfakluge.hpp: No such file or directory

  #73 opened 3 months ago by uveyikk
  0

• can't build

  #72 opened 2 years ago by 8banzhuan
  1

• Makefile:37: *** missing separator. Stop.

  #64 opened 5 years ago by JuFengWang
  5

• Read (b)gzipped GFA format files

  #69 opened 3 years ago by AndreaGuarracino
  0

• Extracting regions with a degree threshold

  #66 opened 5 years ago by Zethson
  0

• gfak::mmap_open opens O_RDWR

  #65 opened 5 years ago by tetron
  2

• Update submodules

  #60 opened 5 years ago by cartoonist
  2

• Header only library fails linking if included in >= 2 object files

  #51 opened 6 years ago by jeizenga
  3

• extract: Outputs blank lines

  #48 opened 6 years ago by sjackman
  1

• Compact the assembly graph [feature request]

  #46 opened 6 years ago by sjackman
  0

• [FEATURE REQUEST] Update diff to use MinHash-based sequence comparison

  #45 opened 6 years ago by edawson
  0

• [Feature request] GFAK trim - trim a graph by segment length

  #43 opened 6 years ago by edawson
  6

• Renumber segments [feature request]

  #44 opened 6 years ago by sjackman
  1

• JOSS submission updates

  #42 opened 6 years ago by edawson
  0

• fillseq: segfaults when GFA does not exist, succeeds when FASTA does not exist

  #40 opened 6 years ago by sjackman
  2

• Trim overlapping bits of contigs [feature request]

  #21 opened 6 years ago by sjackman
  15

• gfak build command

  #32 opened 6 years ago by edawson
  2

• GFA file of only gap records segfaults

  #30 opened 7 years ago by sjackman
  5

• fillseq: Output is not deterministic

  #37 opened 6 years ago by sjackman
  13

• Tag a stable release

  #36 opened 6 years ago by sjackman
  4

• path_elem orientations are backward in GFA 0.1

  #34 opened 7 years ago by adamnovak
  2

• Reduce output RAM usage / Change the way << operator works

  #28 opened 7 years ago by edawson
  1

• Homebrew / Linuxbrew package

  #24 opened 7 years ago by sjackman
  5

• Switch to faster split function

  #27 opened 7 years ago by edawson
  1

• Add --version option to each tool [feature request]

  #22 opened 7 years ago by sjackman
  10

• Please document the command line utilities

  #20 opened 7 years ago by sjackman
  2

• Single executable

  #23 opened 7 years ago by sjackman
  1

• N50 / L50 / N90 / L90 recipes could be faster

  #16 opened 7 years ago by edawson
  1

• Missing optional element in "L" line parsing

  #26 opened 7 years ago by edawson
  1

• Links still not showing

  #19 opened 7 years ago by LukasW94
  3

• Sequence ends aren't handled correctly when the sequence string isn't included

  #13 opened 7 years ago by edawson
  1

• Build error

  #18 opened 7 years ago by LukasW94
  2

• fasta -> GFA

  #14 opened 7 years ago by edawson
  1

• GFAKluge assumes V1.0 / 0.1

  #15 opened 7 years ago by edawson
  0

• Compilation issue with g++ 5.3.1

  #6 opened 7 years ago by ekg
  4

• GFA/DAS divergence (GFAK has fallen off-spec)

  #7 opened 7 years ago by edawson
  2

• opt_elems are not parsed for C and L lines

  #10 opened 7 years ago by edawson
  1

• Edges don't receive IDs in the same namespace as segments

  #12 opened 7 years ago by edawson
  0

• GFA isn't GFA

  #8 opened 8 years ago by edawson
  1

• GFA extended to include JSON tags

  #5 opened 9 years ago by edawson
  1

• gfakluge doesn't parse optional fields

  #1 opened 9 years ago by edawson
  1

• Segment labels sorted alphabetically and not by numeric value

  #3 opened 9 years ago by edawson
  1

• gfakluge lacks sanity checking

  #2 opened 9 years ago by edawson
  0