effect

effect's Stars

• ipython/ipython

  Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.

  Language:Python16.3k7437.4k4.4k

• Bash-it/bash-it

  A community Bash framework.

  Language:Shell14.3k3256352.3k

• sympy/sympy

  A computer algebra system written in pure Python

  Language:Python12.9k29113.3k4.4k

• cheat/cheat

  cheat allows you to create and view interactive cheatsheets on the command-line. It was designed to help remind *nix system administrators of options for commands that they use frequently, but not frequently enough to remember.

  Language:Go12.3k189234821

• dgorissen/coursera-dl

  A script for downloading course material (video's, pdfs, quizzes, etc) from coursera.org

  Language:Python1.7k121147300

• bcbio/bcbio-nextgen

  Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

  Language:Python990863.1k354

• ialbert/biostar-central

  Biostar Q&A

  Language:Python58132456231

• bcaffo/Caffo-Coursera

  A repository of my Coursera latex code and notes

  Language:R3611382649

• wurmlab/sequenceserver

  Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)

  Language:JavaScript27020446113

• chapmanb/cloudbiolinux

  CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

  Language:Python25726148158

• lh3/fermi

  A WGS de novo assembler based on the FMD-index for large genomes

  Language:C75141216

• chapmanb/bcbio.variation

  Toolkit to analyze genomic variation data, built on the GATK with Clojure

  Language:Clojure66173015

• peterjc/picobio

  Miscellaneous Bioinformatics scripts etc mostly in Python

  Language:Python466213

• bjpop/rubra

  Infrastructure code to support DNA pipeline

  Language:Python3892218

• melbournebioinformatics/variant_calling_pipeline

  A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framework in Python.

  Language:Python3316926

• gkno/gkno_launcher

  The gkno launcher for executing tools or pipelines

  Language:Python3212677

• hubgit/cite-urls

  Generate citations for a list of URLs

  Language:JavaScript28612

• TGAC/RAMPART

  A configurable de novo assembly pipeline

  Language:Java2811337

• roryk/junkdrawer

  collection of small scripts or how-tos that don't fall under a separate project

  Language:Python219111

• metalhelix/pipette

  variant discovery and annotation using GATK and Ensembl

  Language:Ruby17402

• jamesabbott/BugBuilder

  Hands-free microbial genome assembly

  Language:Perl111146

• jgurtowski/jnomics

  Cloud Scale Genomic Analysis Framework for Hadoop

  Language:Java6403

• jgurtowski/jnomics-manager

  Service Interface

  Language:Java4501