TGAC/RAMPART

Issues

• Failing in mecq stage

  #33 opened 5 years ago by DerangePsycho
  0

• pass parameter to quast

  #29 opened 9 years ago by abrozzi
  9

• [mass_select] what if a metric has the same raw value in all the assemblies?

  #32 opened 8 years ago by abrozzi
  0

• subsampler

  #31 opened 8 years ago by abrozzi
  3

• Failed installing RAMPART-develop

  #30 opened 9 years ago by MaestSi
  4

• input fastq.gz

  #28 opened 9 years ago by abrozzi
  3

• Failing in amp_analysis stage

  #27 opened 9 years ago by MaestSi
  1

• Failing on quake.py with 0.12.2

  #26 opened 9 years ago by jerowe
  5

• Feature Request - Debug mode where commands are shown but not run

  #24 opened 9 years ago by jerowe
  1

• rampart ecoli_full_job.xml getting error with rampart 0.12.0

  #25 opened 9 years ago by jerowe
  1

• Add RAMPART version number into standard output for each run

  #23 opened 10 years ago by maplesond
  0

• Add support for DISCOVAR

  #21 opened 10 years ago by maplesond
  1

• RAMPART fails if kmer value is too large for assembler

  #3 opened 11 years ago by maplesond
  0

• Add support for MaSuRCA

  #22 opened 10 years ago by maplesond
  0

• Better method for scaling metrics

  #20 opened 10 years ago by maplesond
  1

• Separate assembly selection step from assembly analysis step.

  #6 opened 10 years ago by maplesond
  1

• Check for unknown processes in external configuration file

  #16 opened 10 years ago by maplesond
  1

• javadoc fails

  #19 opened 10 years ago by sjackman
  5

• Cannot run multiple RAMPART instances on some high core machines

  #18 opened 10 years ago by maplesond
  1

• Check for unknown tools in rampart config file.

  #17 opened 10 years ago by maplesond
  1

• Potential issue with Quake?

  #10 opened 10 years ago by maplesond
  1

• RAMPART ignores unknown attributes in XML configuration file

  #15 opened 10 years ago by ram9841755641
  1

• Compress final output into a tarball for easier distribution

  #12 opened 11 years ago by maplesond
  2

• Implement assembly analysis for AMP stage.

  #5 opened 10 years ago by maplesond
  1

• Issue with running MECQ in parallel

  #9 opened 11 years ago by maplesond
  1

• Create new tool to help user's create job configuration files

  #14 opened 11 years ago by maplesond
  0

• Add mechanism to learn library properties

  #13 opened 11 years ago by maplesond
  0

• CEGMA analysis still referred to as "COMPLETENESS" in job config.

  #8 opened 11 years ago by maplesond
  1

• SoapDeNovo is never operational

  #11 opened 11 years ago by maplesond
  1

• Bug in conan debug output

  #7 opened 11 years ago by maplesond
  1

• Ensure finaliser does not create fasta headers with dots or pipes.

  #4 opened 11 years ago by maplesond
  1

• Control whether to overwrite or keep existing assemblies

  #2 opened 11 years ago by maplesond
  0

• Enhance AMP - parallel execution - assembly comparison - parameter optimisation

  #1 opened 11 years ago by maplesond
  0