Earlham Institute

BBSRC-supported life science research institute in Norwich, UK

Norwich, UK

Pinned Repositories

361Division
361 Division - Scientific Training, Education and Learning
Language:R28 27 031
Aequatus
Earlham Institute's Synteny Browser
Language:JavaScript7 8 40
earlham-galaxytools
Galaxy tools and workflows developed at the Earlham Institute
Language:Python14 9 2113
KAT
The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.
Language:C++200 23 16351
kontaminant
Tool to look for contaminants, with a kmer database.
Language:C15 14 35
lncRNA-analysis
Language:Python71
NanoOK
Analysis tool for Nanopore sequencing data
Language:Java33 17 08
RAMPART
A configurable de novo assembly pipeline
Language:Java27 11 337
statsdb
StatsDB
Language:Perl9 12 03
TGACBrowser
TGAC's Genome Browser
Language:JavaScript10 6 20

Earlham Institute's Repositories

TGAC/earlham-galaxytools
Galaxy tools and workflows developed at the Earlham Institute
Language:Python14 9 2113
TGAC/TGACBrowser
TGAC's Genome Browser
Language:JavaScript10 6 20
TGAC/Aequatus
Earlham Institute's Synteny Browser
Language:JavaScript7 8 40
TGAC/COPO-documentation
COPO documentation was created using the Sphinx reStructuredText (reST) markup language which is hosted on readthedocs.io. The documentation uses Sphinx.
Language:Python2
TGAC/grassroots-service-field-trial
A Grassroots service for storing the data for field trials
Language:C2 13 0
TGAC/COPO-production
mainline production repository for COPO
Language:JavaScript11
TGAC/grassroots-core
The core libraries of the Grassroots infratructure
Language:C1 15 0
TGAC/knowledge_base
EI specific documentation (induction materials, tool/method specific advice); contributions made by EI users.
1
TGAC/SapioExpampleProject
Earlham Data Portal
Language:Python1 4 01
TGAC/2024-06-11-earlham
Language:HTML1
TGAC/ckanext-copo-schema
Custom metadata for EI CKAN
Language:Python
TGAC/COPO-sample-audit
to monitor the copo sample changes
Language:Python
TGAC/EICore
Home repo for EICore metadata for single cell work
TGAC/eisca
A single-cell RNA-seq pipeline aimed at covering all analysis stages from quantification and clustering to tertiary analyses.
Language:Nextflow
TGAC/grassroots-client-java
Language:JavaScript
TGAC/grassroots-client-qt-desktop
The desktop Grassroots client application for running services on Grassroots servers
Language:C++3 0
TGAC/grassroots-docs
Documentation about the Grassroots Infrastructure
Language:JavaScript
TGAC/grassroots-geocoder
The Grassroots library to use for making requests to get GPS coordinates for addresses and vice versa
Language:C13 0
TGAC/grassroots-jobs-manager-mongodb
The MongoDB-based Jobs Manager for the Grassroots infrastructure
Language:C
TGAC/grassroots-lucene
Lucene engine customised for Grassroots data
Language:Java12 0
TGAC/grassroots-server-apache-httpd
The Apache httpd server module for the Grassroots infrastructure
Language:C14 0
TGAC/grassroots-service-gene-trees
Language:C2 0
TGAC/grassroots-service-marti
A service to integrate Grassroots Field Trials and MARTI data
Language:C
TGAC/grassroots-service-search
A service to search across all of the Grassroots data and tools
Language:C11 0
TGAC/grassroots-service-users-groups
A service to manage the authorization of users and groups within Grassroots
Language:C
TGAC/grassroots-web-portal-static-onepage
Language:HTML14 0
TGAC/grassroots_services_django_web
Language:JavaScript11 01
TGAC/Nuffield_LIMS
Scaffold Django project for a LIMS
Language:Python
TGAC/rfparser
Parse ResearchFish publications to update CKAN
Language:Python2 1
TGAC/SingleCellSchemas
For resources relating to EI Cellgen ISP
Language:Python3 0