Pinned Repositories
361Division
361 Division - Scientific Training, Education and Learning
Aequatus
Earlham Institute's Synteny Browser
earlham-galaxytools
Galaxy tools and workflows developed at the Earlham Institute
KAT
The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.
kontaminant
Tool to look for contaminants, with a kmer database.
lncRNA-analysis
NanoOK
Analysis tool for Nanopore sequencing data
RAMPART
A configurable de novo assembly pipeline
statsdb
StatsDB
TGACBrowser
TGAC's Genome Browser
Earlham Institute's Repositories
TGAC/earlham-galaxytools
Galaxy tools and workflows developed at the Earlham Institute
TGAC/TGACBrowser
TGAC's Genome Browser
TGAC/Aequatus
Earlham Institute's Synteny Browser
TGAC/COPO-documentation
COPO documentation was created using the Sphinx reStructuredText (reST) markup language which is hosted on readthedocs.io. The documentation uses Sphinx.
TGAC/grassroots-service-field-trial
A Grassroots service for storing the data for field trials
TGAC/COPO-production
mainline production repository for COPO
TGAC/grassroots-core
The core libraries of the Grassroots infratructure
TGAC/knowledge_base
EI specific documentation (induction materials, tool/method specific advice); contributions made by EI users.
TGAC/SapioExpampleProject
Earlham Data Portal
TGAC/2024-06-11-earlham
TGAC/ckanext-copo-schema
Custom metadata for EI CKAN
TGAC/COPO-sample-audit
to monitor the copo sample changes
TGAC/EICore
Home repo for EICore metadata for single cell work
TGAC/eisca
A single-cell RNA-seq pipeline aimed at covering all analysis stages from quantification and clustering to tertiary analyses.
TGAC/grassroots-client-java
TGAC/grassroots-client-qt-desktop
The desktop Grassroots client application for running services on Grassroots servers
TGAC/grassroots-docs
Documentation about the Grassroots Infrastructure
TGAC/grassroots-geocoder
The Grassroots library to use for making requests to get GPS coordinates for addresses and vice versa
TGAC/grassroots-jobs-manager-mongodb
The MongoDB-based Jobs Manager for the Grassroots infrastructure
TGAC/grassroots-lucene
Lucene engine customised for Grassroots data
TGAC/grassroots-server-apache-httpd
The Apache httpd server module for the Grassroots infrastructure
TGAC/grassroots-service-gene-trees
TGAC/grassroots-service-marti
A service to integrate Grassroots Field Trials and MARTI data
TGAC/grassroots-service-search
A service to search across all of the Grassroots data and tools
TGAC/grassroots-service-users-groups
A service to manage the authorization of users and groups within Grassroots
TGAC/grassroots-web-portal-static-onepage
TGAC/grassroots_services_django_web
TGAC/Nuffield_LIMS
Scaffold Django project for a LIMS
TGAC/rfparser
Parse ResearchFish publications to update CKAN
TGAC/SingleCellSchemas
For resources relating to EI Cellgen ISP