Pinned Repositories
361Division
361 Division - Scientific Training, Education and Learning
Aequatus
Earlham Institute's Synteny Browser
earlham-galaxytools
Galaxy tools and workflows developed at the Earlham Institute
KAT
The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.
kontaminant
Tool to look for contaminants, with a kmer database.
lncRNA-analysis
NanoOK
Analysis tool for Nanopore sequencing data
RAMPART
A configurable de novo assembly pipeline
statsdb
StatsDB
TGACBrowser
TGAC's Genome Browser
Earlham Institute's Repositories
TGAC/KAT
The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.
TGAC/earlham-galaxytools
Galaxy tools and workflows developed at the Earlham Institute
TGAC/grassroots-client-frictionless-data
A tool to extract the resources from a Grassroots Frictionless Data Package
TGAC/grassroots-service-field-pathogenomics
The Grassroots service for geolocation and dates of samples of crop pathogenomic data
TGAC/grassroots-service-polymarker
The Polymarker service for the Grassroots infrastructure.
TGAC/SalmoNet
SalmoNet website
TGAC/SapioExpampleProject
Earlham Data Portal
TGAC/CaptureSeq_Annotate
A pipeline for human RNA isoform annotation and quantification using Oxford Nanopore CaptureSeq data
TGAC/2023-12-12-earlham
TGAC/2024-01-23-earlham
TGAC/grassroots-brapi-module
A wrapper for the Grassroots DFW Field Trial Service to give a BrAPI interface
TGAC/grassroots-client-qt-desktop
The desktop Grassroots client application for running services on Grassroots servers
TGAC/grassroots-field-trials-course
The material for the Grassroots Field Trials course
TGAC/grassroots-frictionless-data
A library to help building Frictionless Data Packages
TGAC/grassroots-frictionless-data-schemas
TGAC/grassroots-geocoder
The Grassroots library to use for making requests to get GPS coordinates for addresses and vice versa
TGAC/grassroots-handler-file
The handler for locally-mounted files and directories for the Grassroots infrastructure
TGAC/grassroots-handler-http
The handler for accessing http(s)-based resources within the Grassroots infrastructure
TGAC/grassroots-jobs-manager-mongodb
The MongoDB-based Jobs Manager for the Grassroots infrastructure
TGAC/grassroots-parental-genotype-service
A Grassroots service to give parental cross information for given markers
TGAC/grassroots-service-ensembl
A Service using the Ensembl REST API for the Grassroots infrastructure.
TGAC/grassroots-service-example
An example service for developers to see how to develop services for the Grassroots infrastructure
TGAC/grassroots-service-gene-trees
TGAC/grassroots-service-germplasm
A Grassroots service for converting between seed codes
TGAC/grassroots-service-samtools
The SamTools service for the Grassroots infrastructure
TGAC/grassroots-service-users-groups
A service to manage the authorization of users and groups within Grassroots
TGAC/grassroots-service-web-search
A Grassroots service that can wrap an existing external web-based search service into a Graassroots service
TGAC/grassroots-simple-servers-manager
TGAC/grassroots-user-docs
TGAC/grassroots-users-documentation
Static files generated using Materials for mkdocs