Earlham Institute

BBSRC-supported life science research institute in Norwich, UK

Norwich, UK

Pinned Repositories

361Division
361 Division - Scientific Training, Education and Learning
Language:R28 26 031
Aequatus
Earlham Institute's Synteny Browser
Language:JavaScript7 7 40
earlham-galaxytools
Galaxy tools and workflows developed at the Earlham Institute
Language:Python14 8 2114
KAT
The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.
Language:C++210 25 16352
kontaminant
Tool to look for contaminants, with a kmer database.
Language:C15 13 35
lncRNA-analysis
Language:Python71
NanoOK
Analysis tool for Nanopore sequencing data
Language:Java33 16 08
RAMPART
A configurable de novo assembly pipeline
Language:Java28 11 337
statsdb
StatsDB
Language:Perl9 11 03
TGACBrowser
TGAC's Genome Browser
Language:JavaScript10 5 20

Earlham Institute's Repositories

TGAC/NanoOK
Analysis tool for Nanopore sequencing data
Language:Java33 16 08
TGAC/361Division
361 Division - Scientific Training, Education and Learning
Language:R28 26 031
TGAC/portcullis
Splice junction analysis and filtering from BAM files
Language:C++4 11 01
TGAC/MultiPEN
Language:MATLAB3 4 31
TGAC/bioruby-polyploid-tools
Library and tools to deal with polyploid genomics
Language:Ruby2 11 03
TGAC/grassroots-api
The Grassroots API - lightweight infrastructure for data federation, analysis and search
Language:JavaScript2 18 00
TGAC/Mulea
Language:R2 13 70
TGAC/Aequatus-Docker
1 12 0
TGAC/aequatus.js
Visualisation JavaScript library for Homologous Genes
Language:JavaScript1 14 0
TGAC/2017-10-10-norwich
Language:HTML
TGAC/2017-11-21-EI
Language:Python13 0
TGAC/2019-01-23-earlham
Language:Python
TGAC/2019-03-05-earlham
Language:Python12 02
TGAC/2020-01-21-earlham
Language:HTML1
TGAC/2020-03-03-earlham
Language:HTML
TGAC/2020-06-30-earlham
Language:HTML
TGAC/centrifuge
Classifier for metagenomic sequences
Language:C++12 0
TGAC/cropsight-api
REST api for CropSight
TGAC/data_policy
Earlham Institute's current data management and security policies
14 0
TGAC/grassroots-client-web-elasticsearch-ingest
Language:JavaScript13 0
TGAC/grassroots-doc
A repository to bring together all of the multiple repositories that the grassroots docs are built from so that they can be built and hosted on readthedocs.org
12 0
TGAC/grassroots-field-trial-database-schema
Database schema for recording field trial data for DFW
11 0
TGAC/grassroots-job-tracker-docker
11 0
TGAC/grassroots-reference-services
This is a set of example configuration files for the Grassroots infrastructure to run some referred services
Language:Makefile
TGAC/grassroots-seedstor-api
API for https://www.seedstor.ac.uk to improve the programmatic access. Used in the Grassroots Infrastructure and CerealsDB.
Language:PHP11 0
TGAC/grassroots-ui-test
11 0
TGAC/grassroots-web-portal-static
Language:CSS12 0
TGAC/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
Language:Python1
TGAC/spectre
A collection of Phylogenetics tools for creating and manipulating networks and trees.
Language:Java11 0
TGAC/TGACBrowser-Docker
Dockerized instance of TGAC Browser
Language:Perl