Pinned Repositories
4Magnus
Some scripts to help magnus with his sequences
aliceflow
NextFlow framework to streamline the Genalice variant call pipeline
DBS_Analysis
fragplot
Python script to plot fragment sizes from two csv files (minIon and fragmentanalyzer).
RawDataDistribution
Small script to quickly plot the spatial distribution of raw data from fastq files.
scripts
Some scripts that I use now and then.
SEAseq
Script for analysis of SEAseq data
st_pipeline
ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.
taggd
Genetic barcode demultiplexing
TCR
A pipe for extracting TCRs from RNAseq data.
elhb's Repositories
elhb/JavaTest
Ignore this as it's just for testing stuff
elhb/polyG_calling
A set of python scripts that call lengths of G/C homopolymers in aligned illumina reads. Takes a bamfile with aligned reads and custom format list of homopolymer regions as input.