enormandeau/stacks_workflow

Issues

• number of populations outputted by 05_filter_vcf_fast.py doesn't match my popmap file

  #41 opened 2 years ago by spencer411
  2

• bam files from align PE reads empty

  #40 opened 2 years ago by spencer411
  2

• 00_prepare_lane_info: No such file or directory

  #38 opened 2 years ago by menegidio-lab
  1

• how to modify the cutoff value?

  #39 opened 3 years ago by nods-sparrow
  2

• ln failed to create link, operation not permitted

  #34 opened 5 years ago by nclowell
  8

• Clean RAD Seq data

  #36 opened 3 years ago by kawu001
  4

• stacks v2.0 vcf output lacks AD for some samples

  #37 opened 3 years ago by Carol-Symbiomics
  1

• ./00-scripts/01_cutadapt.sh: line 24: parallel: command not found

  #35 opened 5 years ago by laaryjc
  1

• filter_vcf does not recognise vcf structure

  #32 opened 5 years ago by LaraUrban
  3

• whis is the best way to try new beta

  #31 opened 6 years ago by HelioJimeArch
  1

• Create batch_1.sumstats.tsv subset for wanted populations

  #4 opened 11 years ago by enormandeau
  0

• Documentation file

  #6 opened 11 years ago by jlaroche
  0